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Tan0018411 (gene) of Snake gourd v1 genome

Gene IDTan0018411
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG10:34101231..34101581
RNA-Seq ExpressionTan0018411
SyntenyTan0018411
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-2150.86Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MT+ EYEKK+TELSKYA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  LRVE+SL ++R  +        T+S  + R+R  +  + RF
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         P VS +GSFK    G
Subjt:  TPGVSGKGSFKPHRGG

KAA0042193.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.3e-2149.14Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MT++EYEK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS+ W +F KL E  LRVE+SL ++R  +        T+S  + R+R  +G +  F
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         PGVS KG+FK    G
Subjt:  TPGVSGKGSFKPHRGG

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]1.5e-2150.86Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MTI EYEKK+TELS YA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  LRVE+SL ++R  +        T+S  + R+R  +  + RF
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         PGVS +G+FK    G
Subjt:  TPGVSGKGSFKPHRGG

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.5e-2150.86Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MT+ EYEKK+TELSKYA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  LRVE+SL ++R  +        T+S  + R+R  +  + RF
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         P VS +GSFK    G
Subjt:  TPGVSGKGSFKPHRGG

TYK26763.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.3e-2149.14Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MT++EYEK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS+ W +F KL E  LRVE+SL ++R  +        T+S  + R+R  +G +  F
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         PGVS KG+FK    G
Subjt:  TPGVSGKGSFKPHRGG

TrEMBL top hitse value%identityAlignment
A0A5A7T1M0 Reverse transcriptase1.2e-2150.86Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MT+ EYEKK+TELSKYA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  LRVE+SL ++R  +        T+S  + R+R  +  + RF
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         P VS +GSFK    G
Subjt:  TPGVSGKGSFKPHRGG

A0A5A7TG44 DNA/RNA polymerases superfamily protein2.1e-2149.14Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MT++EYEK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS+ W +F KL E  LRVE+SL ++R  +        T+S  + R+R  +G +  F
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         PGVS KG+FK    G
Subjt:  TPGVSGKGSFKPHRGG

A0A5A7UZM6 Gag protease polyprotein-like protein7.1e-2250.86Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MTI EYEKK+TELS YA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  LRVE+SL ++R  +        T+S  + R+R  +  + RF
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         PGVS +G+FK    G
Subjt:  TPGVSGKGSFKPHRGG

A0A5D3BB91 Reverse transcriptase1.2e-2150.86Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MT+ EYEKK+TELSKYA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  LRVE+SL ++R  +        T+S  + R+R  +  + RF
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         P VS +GSFK    G
Subjt:  TPGVSGKGSFKPHRGG

A0A5D3DT34 DNA/RNA polymerases superfamily protein2.1e-2149.14Show/hide
Query:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF
        MT++EYEK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS+ W +F KL E  LRVE+SL ++R  +        T+S  + R+R  +G +  F
Subjt:  MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGG
         PGVS KG+FK    G
Subjt:  TPGVSGKGSFKPHRGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATAATAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAATGAGACAAATCGATGCAAGAGGTTCGAGGATGGTCTACGAAT
AGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGCTGAGACGACATTACGGGTAGAGCGAAGCCTGGTGGATGACAGAATGGGAAAAG
GGGTTGTAGGTGGTGGTCATACCACTTATTCTGTTGATTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTTTCAGGAAAAGGGAGCTTT
AAACCCCATCGTGGTGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTATAATAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAATGAGACAAATCGATGCAAGAGGTTCGAGGATGGTCTACGAAT
AGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGCTGAGACGACATTACGGGTAGAGCGAAGCCTGGTGGATGACAGAATGGGAAAAG
GGGTTGTAGGTGGTGGTCATACCACTTATTCTGTTGATTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTTTCAGGAAAAGGGAGCTTT
AAACCCCATCGTGGTGGGTAG
Protein sequenceShow/hide protein sequence
MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSF
KPHRGG