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Tan0018422 (gene) of Snake gourd v1 genome

Gene IDTan0018422
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationLG05:81340624..81342733
RNA-Seq ExpressionTan0018422
SyntenyTan0018422
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152507.2 protein NOI4 [Cucumis sativus]1.0e-3186.84Show/hide
Query:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        MASQDKGR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKTTGTAANMV  +RNE V+NNE Y QYPPPKKRWFCCG
Subjt:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

XP_008439256.1 PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]4.6e-3286.84Show/hide
Query:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        MASQD+GRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AANMV  +RNE V+NNE Y QYPPPKKRWFCCG
Subjt:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

XP_022137179.1 uncharacterized protein LOC111008714 isoform X1 [Momordica charantia]5.1e-3187.67Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA+ V+PQRNES+YNNE + QY PPKKRWFCCG
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

XP_022137180.1 uncharacterized protein LOC111008714 isoform X2 [Momordica charantia]1.1e-3086.3Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        +D+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA+ V+PQRNES+YNNE + QY PPKKRWFCCG
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

XP_038894676.1 protein NOI4 isoform X1 [Benincasa hispida]3.9e-3186.84Show/hide
Query:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTGTAAN V  Q +E V+NNE Y QYPPPKKRWFCCG
Subjt:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

TrEMBL top hitse value%identityAlignment
A0A0A0LRE5 AvrRpt-cleavage domain-containing protein5.0e-3286.84Show/hide
Query:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        MASQDKGR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKTTGTAANMV  +RNE V+NNE Y QYPPPKKRWFCCG
Subjt:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

A0A1S3AZ04 RPM1-interacting protein 4 isoform X12.2e-3286.84Show/hide
Query:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        MASQD+GRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AANMV  +RNE V+NNE Y QYPPPKKRWFCCG
Subjt:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

A0A6J1C5Z3 uncharacterized protein LOC111008714 isoform X25.5e-3186.3Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        +D+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA+ V+PQRNES+YNNE + QY PPKKRWFCCG
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

A0A6J1C6I4 uncharacterized protein LOC111008714 isoform X12.5e-3187.67Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA+ V+PQRNES+YNNE + QY PPKKRWFCCG
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

A0A6J1GRZ4 RPM1-interacting protein 4-like9.4e-3184.21Show/hide
Query:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG
        MA QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTG+ ANMV+ Q NE  YNNE + Q PPPKKRWFCCG
Subjt:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG

SwissProt top hitse value%identityAlignment
O22633 Protein NOI41.3e-1660.56Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCC
        DKGRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   +    + +E    + G     P  K+W CC
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCC

Q8GYN5 RPM1-interacting protein 44.5e-0641.07Show/hide
Query:  SQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYN
        S +K   +PKFG+WD NNP+SA+G+T IFNK R+E+ +    +       ++S  N
Subjt:  SQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYN

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein1.1e-1861.97Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCC
        DKGRPLPKFGEWDVN+P+SAEGFTVIFNKAR+EKK  G +    +P ++E  YN  G      P K+WFCC
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCC

AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein1.2e-1751.72Show/hide
Query:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----NMVAPQRNESVYNNEG---------YRQYPPPKKRWFC
        MA+ ++ RPLPKFGEWD  NP SAEGFTVIFNKARD+KKT  TA     ++V+P RNE    N           + Q P  KK+W C
Subjt:  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----NMVAPQRNESVYNNEG---------YRQYPPPKKRWFC

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein1.1e-1592.31Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTG
        +DKGRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTG

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein6.9e-1859.72Show/hide
Query:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCC
        +DKGRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   +    + +E    + G     P  K+W CC
Subjt:  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCC

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein7.4e-2062.34Show/hide
Query:  SQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT---TGTAAN-MVAPQRNE-SVYNNEGYRQYPPPKKRWFC
        +++KG+PLPKFGEWDVNNPASAEGFTVIF+KA DEKKT   +G   N +V+PQRN+ S  NN    Q P  K +WFC
Subjt:  SQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT---TGTAAN-MVAPQRNE-SVYNNEGYRQYPPPKKRWFC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCGCAGGACAAGGGTCGTCCACTACCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCAGAAGGATTCACGGTCATATTTAACAAGGCTAGAGATGA
GAAGAAGACCACTGGAACTGCTGCCAATATGGTTGCACCACAAAGAAATGAATCTGTCTATAACAATGAAGGTTACCGTCAGTATCCTCCACCGAAGAAGAGGTGGTTTT
GCTGTGGTTAA
mRNA sequenceShow/hide mRNA sequence
TCTCAACTCTCTTTCTCTCTCTAAGAAATTCTGTGTTCTTGTAAGGTTGTCCATCCTATTTTGTTCGCATTCTCAATTTATTTTCTTTCCGCTTTTGGTCTCCTCGAATC
CGATCCCCCGCCCAGCGTCCTGCAATCATGGCATCGCAGGACAAGGGTCGTCCACTACCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCAGAAGGATTCAC
GGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTGCACCACAAAGAAATGAATCTGTCTATAACAATGAAGGTTACCGTCAGT
ATCCTCCACCGAAGAAGAGGTGGTTTTGCTGTGGTTAAGCCACAGTGGTTTCAGGATCTTGAATTTGTGTAATCTATTGTGAAAGCCTGTAAAATTTGAGAGCCACATCC
AACCGCATACACCTGAAATTCCAACAAAGTTGTTGCACCAACAAATGACTCATACTGTTCCTTTTCCCTTTTCACCTTGGCGGCTTTCATGCTTTAAAAACGTTATACAA
TAATTTATATCATATGTTATTCTTTTAATTTGTATTGTAATACAGGATGGAAAAGACAAATTACGTTGTCAAAATTGTCTATCAATTTCATGGTGTTCTTTATAGGGACT
TATACATATAAATTAGCATAATCTAT
Protein sequenceShow/hide protein sequence
MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG