; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0018457 (gene) of Snake gourd v1 genome

Gene IDTan0018457
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG01:13327204..13328436
RNA-Seq ExpressionTan0018457
SyntenyTan0018457
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC84030.1 hypothetical protein OsI_30257 [Oryza sativa Indica Group]1.6e-1735Show/hide
Query:  RRVNSLISSNGHWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTV
        R V+ LI  +G W+ D + ++ LP+DVE I  I +   + +D I W  D  GRFSV++AYHLA+ L+Q D+ SSS+ N     W   W  ++    K   
Subjt:  RRVNSLISSNGHWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTV

Query:  WAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVIW
        W  I N + T +N  KR ++ + +C  C    E   H ++
Subjt:  WAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVIW

KAG6628833.1 hypothetical protein CIPAW_14G039600 [Carya illinoinensis]4.1e-1832.62Show/hide
Query:  RVNSLIS-SNGHWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTV
        +V+ LI   NG+W  D++  +   +D E I ++PI  L  +D+++W     GRFSVK+AY L     ++     S  ++ +E+WK+ WNLD     K  +
Subjt:  RVNSLIS-SNGHWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTV

Query:  WAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVIWG
        W + Q ++  ++NL +R +  + +C  C + +E A H+IWG
Subjt:  WAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVIWG

VVA38592.1 PREDICTED: reverse mRNAase, partial [Prunus dulcis]4.4e-2037.41Show/hide
Query:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKE-VWKRFWNLDS
        D ++  +V+ LI + G   W+L  L N  LPVDV DI RIP+      D I+W  D  G F+VK+AY +AL ++  DE  SS+ N     +W+  WN + 
Subjt:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKE-VWKRFWNLDS

Query:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI
            K   W +  +I+ T+ NL K+G+D   +C+FC    E+A HV+
Subjt:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI

XP_018829825.2 uncharacterized protein LOC108997893 [Juglans regia]1.6e-1735.16Show/hide
Query:  WNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTVWAIIQNIILTRQ
        WN ++++      + + I   PI  +  +D IIW     G FSVK+AYHL  +    +   +S  N  KEVWK+ W LD  P  KT +W   Q  + T+ 
Subjt:  WNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTVWAIIQNIILTRQ

Query:  NLSKRGIDTNPLCLFCRKNLENATHVIW
        NL K+ + ++PLC  C +  E+  HV+W
Subjt:  NLSKRGIDTNPLCLFCRKNLENATHVIW

XP_030502714.1 uncharacterized protein LOC115717884 [Cannabis sativa]4.8e-1936.43Show/hide
Query:  RVNSLISSNGHWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTVW
        +++  IS +G+W+   L N+    D++DI  +PI     KD+IIW  +S G F+VK+AYHLA  LS +D  SSS+    ++ W + W+  + P  K  +W
Subjt:  RVNSLISSNGHWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTVW

Query:  AIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVIWG
         ++ + I    NL  R I  +PLC FC+ +LE   H + G
Subjt:  AIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVIWG

TrEMBL top hitse value%identityAlignment
A0A2N9J6I3 Uncharacterized protein6.8e-1935.71Show/hide
Query:  VNSLISSNG-HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTVW
        V+SLI+ +   WN+ +L+   LP DVE I++IP+     +D +IW    KG F+VK+AY++ L+ S   EA SS+  +    WK  W+    P  K   W
Subjt:  VNSLISSNG-HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTVW

Query:  AIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVIWGYLPIASFP--PICV
           +NI+ T+  L ++G+     C +C +  E   HV+WGYL    FP   IC+
Subjt:  AIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVIWGYLPIASFP--PICV

A0A5E4GGB8 PREDICTED: reverse mRNAase (Fragment)2.1e-2037.41Show/hide
Query:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKE-VWKRFWNLDS
        D ++  +V+ LI + G   W+L  L N  LPVDV DI RIP+      D I+W  D  G F+VK+AY +AL ++  DE  SS+ N     +W+  WN + 
Subjt:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKE-VWKRFWNLDS

Query:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI
            K   W +  +I+ T+ NL K+G+D   +C+FC    E+A HV+
Subjt:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI

M5VU98 Reverse transcriptase domain-containing protein6.2e-2037.41Show/hide
Query:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHK-EVWKRFWNLDS
        D ++  +V+ LI + G   W+L  L N  LPVDV DI RIP+      D I+W  D  G F+VK+AY +AL ++  DE  SS+ N     +W+  WN   
Subjt:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHK-EVWKRFWNLDS

Query:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI
            K   W +  +I+ T+ NL K+G+D   +C+FC    E+A HV+
Subjt:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI

M5XHI9 Reverse transcriptase domain-containing protein6.2e-2037.41Show/hide
Query:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHK-EVWKRFWNLDS
        D ++  +V+ LI + G   W+L  L N  LPVDV DI RIP+      D I+W  D  G F+VK+AY +AL ++  DE  SS+ N     +W+  WN   
Subjt:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHK-EVWKRFWNLDS

Query:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI
            K   W +  +I+ T+ NL K+G+D   +C+FC    E+A HV+
Subjt:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI

M5XK32 Reverse transcriptase domain-containing protein (Fragment)1.1e-1936.73Show/hide
Query:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKE-VWKRFWNLDS
        D ++  +V+ LI + G   W+L  L N  LPVDV D  RIP+      D I+W  D  G F+VK+AY +AL ++  DE  SS+ N     +W+  WN   
Subjt:  DVLKGRRVNSLISSNG--HWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKE-VWKRFWNLDS

Query:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI
            K   W +  +I+ T+ NL K+G+D   +C+FC    E+A HV+
Subjt:  IPSHKTTVWAIIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAAGGATGTTCTCAAAGGAAGGCGGGTCAACTCTCTCATTTCTAGTAATGGCCATTGGAACCTGGATATCCTGGAAAACAACCTTCTTCCCGTGGACGTAGAAGA
TATCTCTAGGATTCCTATTGAACCCCTTGTTAACAAAGATGAAATCATTTGGGGTTTGGACTCCAAGGGGCGTTTCTCGGTAAAAAACGCTTATCACCTTGCTTTGAACC
TTTCCCAAAAGGATGAGGCCTCCTCCTCAAACCTTAATCAGCATAAGGAAGTCTGGAAGAGGTTCTGGAATCTGGATTCTATCCCGAGCCACAAGACAACCGTCTGGGCC
ATAATACAAAACATCATTCTTACTCGTCAAAACCTATCGAAAAGAGGAATCGATACTAACCCTCTGTGTTTATTTTGCAGGAAAAACTTGGAGAATGCTACTCATGTCAT
TTGGGGTTACTTACCCATCGCCTCTTTCCCTCCTATTTGTGTCGAATCCGATGCGGCGGAAGCTGTCAATCTGATCAACCACATATCCGAAGATCTAGGTGAAGCCAATT
CTTTGACTGTTGCTATCGAAGATGTAGCCTCCACCTTAGGCAAAGTGACTTTTGCATGGTGCCCCCGGGAGAAGAACACGGCGGCTCACAAGATCGCTAGACTTCCCTCC
TCCCCTGTTTTTGGGCGGATCTTAATCGATCCTCTGTTGCGGAAGACGAGCCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAAGGATGTTCTCAAAGGAAGGCGGGTCAACTCTCTCATTTCTAGTAATGGCCATTGGAACCTGGATATCCTGGAAAACAACCTTCTTCCCGTGGACGTAGAAGA
TATCTCTAGGATTCCTATTGAACCCCTTGTTAACAAAGATGAAATCATTTGGGGTTTGGACTCCAAGGGGCGTTTCTCGGTAAAAAACGCTTATCACCTTGCTTTGAACC
TTTCCCAAAAGGATGAGGCCTCCTCCTCAAACCTTAATCAGCATAAGGAAGTCTGGAAGAGGTTCTGGAATCTGGATTCTATCCCGAGCCACAAGACAACCGTCTGGGCC
ATAATACAAAACATCATTCTTACTCGTCAAAACCTATCGAAAAGAGGAATCGATACTAACCCTCTGTGTTTATTTTGCAGGAAAAACTTGGAGAATGCTACTCATGTCAT
TTGGGGTTACTTACCCATCGCCTCTTTCCCTCCTATTTGTGTCGAATCCGATGCGGCGGAAGCTGTCAATCTGATCAACCACATATCCGAAGATCTAGGTGAAGCCAATT
CTTTGACTGTTGCTATCGAAGATGTAGCCTCCACCTTAGGCAAAGTGACTTTTGCATGGTGCCCCCGGGAGAAGAACACGGCGGCTCACAAGATCGCTAGACTTCCCTCC
TCCCCTGTTTTTGGGCGGATCTTAATCGATCCTCTGTTGCGGAAGACGAGCCGGTAG
Protein sequenceShow/hide protein sequence
MTKDVLKGRRVNSLISSNGHWNLDILENNLLPVDVEDISRIPIEPLVNKDEIIWGLDSKGRFSVKNAYHLALNLSQKDEASSSNLNQHKEVWKRFWNLDSIPSHKTTVWA
IIQNIILTRQNLSKRGIDTNPLCLFCRKNLENATHVIWGYLPIASFPPICVESDAAEAVNLINHISEDLGEANSLTVAIEDVASTLGKVTFAWCPREKNTAAHKIARLPS
SPVFGRILIDPLLRKTSR