; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0018517 (gene) of Snake gourd v1 genome

Gene IDTan0018517
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG05:56660612..56660977
RNA-Seq ExpressionTan0018517
SyntenyTan0018517
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.6e-2663.55Show/hide
Query:  TGNRGREV------SEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVH
        T N  RE       S+ ESS P  E NMEEQ+  R+ QR    + S Q+D EKKYGIERLKALGAT F GTT+PA+AE WL LIEKCFRV RCPEDRKV 
Subjt:  TGNRGREV------SEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVH

Query:  LAAFLLQ
        LA+FLLQ
Subjt:  LAAFLLQ

KAA0056913.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.7e-2357.5Show/hide
Query:  MARGGKRGRQV-EAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKC
        M RG  R R V EA           E  + ESS P  E N+EEQ+  R+ QR    + STQ+D EKK+ IERLKALG+T F  TT+PANAE WL LIEKC
Subjt:  MARGGKRGRQV-EAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKC

Query:  FRVMRCPEDRKVHLAAFLLQ
        FRVMRC EDRKV L+AFLLQ
Subjt:  FRVMRCPEDRKVHLAAFLLQ

XP_038882393.1 uncharacterized protein LOC120073661 [Benincasa hispida]1.1e-2260.2Show/hide
Query:  VSEEESSHPQ--QEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVHLAAFLLQKE
        +SE ES  PQ   +  +E+ +F +I QR   S+GS +AD EKKYGIER KALGA  FEGTTDPA  E+WL+++EKCF VM C EDRK+ LA FLLQKE
Subjt:  VSEEESSHPQ--QEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVHLAAFLLQKE

XP_038890030.1 uncharacterized protein LOC120079741 [Benincasa hispida]2.1e-2363.27Show/hide
Query:  VSEEESSHPQQEV--NMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVHLAAFLLQKE
        +SE ESS PQ      +E+ +F RI QR A SVG  +A+ EKKY IER KALGA  FEGTTDP  AE+WL+++EKCF VM CPEDRKV LA FLLQKE
Subjt:  VSEEESSHPQQEV--NMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVHLAAFLLQKE

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]7.9e-2675.31Show/hide
Query:  MEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVHLAAFLLQK
        ME+++F RITQR A SVGS Q D EKK+GIERLKALGAT F+GTTDP +AE+WL LIEKCF+VMRCPED KV LA FLLQK
Subjt:  MEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVHLAAFLLQK

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein8.8e-2358.33Show/hide
Query:  EAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKV
        EA         G   S+ ESS P  E N+EEQ+  R+ QR    +   Q+D EKKYGIERLKALGAT F GTT+P +AE WL LIEKCF+V RC EDRKV
Subjt:  EAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKV

Query:  HLAAFLLQ
         LAAFLLQ
Subjt:  HLAAFLLQ

A0A5A7T1M0 Reverse transcriptase2.6e-2254.1Show/hide
Query:  MARGGKRGR-QVEAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QR    + S Q+D EKKYG ERLKALGAT F GTT+P + E WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKC

Query:  FRVMRCPEDRKVHLAAFLLQKE
        FRV R  EDRKV LAAFLLQ +
Subjt:  FRVMRCPEDRKVHLAAFLLQKE

A0A5A7ULX5 DNA/RNA polymerases superfamily protein1.8e-2357.5Show/hide
Query:  MARGGKRGRQV-EAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKC
        M RG  R R V EA           E  + ESS P  E N+EEQ+  R+ QR    + STQ+D EKK+ IERLKALG+T F  TT+PANAE WL LIEKC
Subjt:  MARGGKRGRQV-EAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKC

Query:  FRVMRCPEDRKVHLAAFLLQ
        FRVMRC EDRKV L+AFLLQ
Subjt:  FRVMRCPEDRKVHLAAFLLQ

A0A5D3BB91 Reverse transcriptase2.6e-2254.1Show/hide
Query:  MARGGKRGR-QVEAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QR    + S Q+D EKKYG ERLKALGAT F GTT+P + E WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKC

Query:  FRVMRCPEDRKVHLAAFLLQKE
        FRV R  EDRKV LAAFLLQ +
Subjt:  FRVMRCPEDRKVHLAAFLLQKE

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.2e-2663.55Show/hide
Query:  TGNRGREV------SEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVH
        T N  RE       S+ ESS P  E NMEEQ+  R+ QR    + S Q+D EKKYGIERLKALGAT F GTT+PA+AE WL LIEKCFRV RCPEDRKV 
Subjt:  TGNRGREV------SEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRKVH

Query:  LAAFLLQ
        LA+FLLQ
Subjt:  LAAFLLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGGCTGGAACTCAAGAACCTACTGGTAATAGAGGAAGAGAGGTATCAGAGGAAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAAATCTTTACGAGGATAACTCAAAGATCAGCTGAAAGTGTTGGATCAACACAAGCAGATCAAGAAAAGAAGTATGGGATTGAAAGACTGAAGG
CCTTAGGTGCAACAATATTTGAAGGCACGACAGATCCCGCTAATGCTGAGGTTTGGTTAAATCTGATTGAGAAGTGTTTTAGGGTCATGCGATGCCCTGAAGACAGGAAG
GTCCATTTAGCAGCATTCTTGCTCCAGAAAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGGCTGGAACTCAAGAACCTACTGGTAATAGAGGAAGAGAGGTATCAGAGGAAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAAATCTTTACGAGGATAACTCAAAGATCAGCTGAAAGTGTTGGATCAACACAAGCAGATCAAGAAAAGAAGTATGGGATTGAAAGACTGAAGG
CCTTAGGTGCAACAATATTTGAAGGCACGACAGATCCCGCTAATGCTGAGGTTTGGTTAAATCTGATTGAGAAGTGTTTTAGGGTCATGCGATGCCCTGAAGACAGGAAG
GTCCATTTAGCAGCATTCTTGCTCCAGAAAGAGTAG
Protein sequenceShow/hide protein sequence
MARGGKRGRQVEAGTQEPTGNRGREVSEEESSHPQQEVNMEEQIFTRITQRSAESVGSTQADQEKKYGIERLKALGATIFEGTTDPANAEVWLNLIEKCFRVMRCPEDRK
VHLAAFLLQKE