; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0018554 (gene) of Snake gourd v1 genome

Gene IDTan0018554
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG02:5001151..5001522
RNA-Seq ExpressionTan0018554
SyntenyTan0018554
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015385446.1 uncharacterized protein LOC107176866 [Citrus sinensis]1.0e-0428.06Show/hide
Query:  WSLWNQRNKVMFNAGKLKPEDLVTNVDYVFCVYQSSKPTA----------------------WKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLGGCKFI
        W++W  RNK++F A K   +  V   + +   YQ  KP+                       +K+N D A S + N   GL  ++RD+ G  +    K  
Subjt:  WSLWNQRNKVMFNAGKLKPEDLVTNVDYVFCVYQSSKPTA----------------------WKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLGGCKFI

Query:  SYNWPVKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDSR
         ++  V + EA A+R GL+  +  G +   SLI+E DS+
Subjt:  SYNWPVKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDSR

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.5e-0525.58Show/hide
Query:  WSLWNQRNKVMFNAGKLKPEDLVTNVD-YVF-----------------------------CVYQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKP
        W +W  RNK +F     +  D+   +D Y+                                ++     +WKLNT+ AW +  N  GG+ WI+RD  G+ 
Subjt:  WSLWNQRNKVMFNAGKLKPEDLVTNVD-YVF-----------------------------CVYQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKP

Query:  LLGGCKFISYNWPVKFLEAYAIREGLKEV
        +   C+ I     + +LE  AI EGL+ +
Subjt:  LLGGCKFISYNWPVKFLEAYAIREGLKEV

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]7.8e-0529.93Show/hide
Query:  WSLWNQRNKVMFNAGKLKPEDLVTNVD--YVFCVYQSSKPTA-------------------WKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLGGCKFIS
        W +WN RN V+F         ++  +        YQS    +                   W LN D +WS   +R GG+ WI+R   G  +L G +F+ 
Subjt:  WSLWNQRNKVMFNAGKLKPEDLVTNVD--YVFCVYQSSKPTA-------------------WKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLGGCKFIS

Query:  YNWPVKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDS
            VK LEA AI EGL+ +   G  +   L +E DS
Subjt:  YNWPVKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.6e-0526.36Show/hide
Query:  WSLWNQRNKVMFNAGKLKPEDLVTNVD-YVF-----------------------------CVYQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKP
        W +W  RNK +F     +  D+   +D Y+                                ++     +WKLNTD AW +  N  GG+ WI+RD  G+ 
Subjt:  WSLWNQRNKVMFNAGKLKPEDLVTNVD-YVF-----------------------------CVYQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKP

Query:  LLGGCKFISYNWPVKFLEAYAIREGLKEV
        +   C+ I     + +LE  AI EGL+ +
Subjt:  LLGGCKFISYNWPVKFLEAYAIREGLKEV

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]1.6e-0532.26Show/hide
Query:  MWSLWNQRNKVMFNAGKLKPE---DLVTNVDYVFCV-----------------------YQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLG
        +W LW  RN VMF    L  E   D++     V C                        +  SKP  WKLN D +W+SK++   GL W+  D L +  + 
Subjt:  MWSLWNQRNKVMFNAGKLKPE---DLVTNVDYVFCV-----------------------YQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLG

Query:  GCKFISYNWPVKFLEAYAIREGLK
        G KF+     V  LEA AI  GL+
Subjt:  GCKFISYNWPVKFLEAYAIREGLK

TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase4.9e-0528.57Show/hide
Query:  MWSLWNQRNKVMFNAGKLKPEDLVTNVDYVFCV----------------YQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLGGCKFISYNWP
        +W LW+ RN+ +F      P  LV +V+Y   V                + +  P  WK+NTD ++SS      GL  ++RD  GK L+ G + + +   
Subjt:  MWSLWNQRNKVMFNAGKLKPEDLVTNVDYVFCV----------------YQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLGGCKFISYNWP

Query:  VKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDS
            E +AI  G +  L  G ++    I+E DS
Subjt:  VKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDS

A0A6J1CDQ4 uncharacterized protein LOC1110105334.9e-0528.39Show/hide
Query:  MWSLWNQRNKVMFNAGKLKPEDL------------VTNVDYVFC-------------VYQSSKPTAW--------KLNTDVAWSS-KLNRGGGLEWIVRD
        +WSLWN+RN  +FN  +++ +DL             TN ++                ++Q+   T W        KL TD ++SS   N G G+  I+RD
Subjt:  MWSLWNQRNKVMFNAGKLKPEDL------------VTNVDYVFC-------------VYQSSKPTAW--------KLNTDVAWSS-KLNRGGGLEWIVRD

Query:  SLGKPLLGGCKFISYNWPVKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDSRRLF
          G+ L    K++ +   V   EA A  EGL+  +  G S    +++E DS R++
Subjt:  SLGKPLLGGCKFISYNWPVKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDSRRLF

A0A6J1CP26 uncharacterized protein LOC1110134121.7e-0525.58Show/hide
Query:  WSLWNQRNKVMFNAGKLKPEDLVTNVD-YVF-----------------------------CVYQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKP
        W +W  RNK +F     +  D+   +D Y+                                ++     +WKLNT+ AW +  N  GG+ WI+RD  G+ 
Subjt:  WSLWNQRNKVMFNAGKLKPEDLVTNVD-YVF-----------------------------CVYQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKP

Query:  LLGGCKFISYNWPVKFLEAYAIREGLKEV
        +   C+ I     + +LE  AI EGL+ +
Subjt:  LLGGCKFISYNWPVKFLEAYAIREGLKEV

A0A6J1DNV9 uncharacterized protein LOC1110224033.8e-0529.93Show/hide
Query:  WSLWNQRNKVMFNAGKLKPEDLVTNVD--YVFCVYQSSKPTA-------------------WKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLGGCKFIS
        W +WN RN V+F         ++  +        YQS    +                   W LN D +WS   +R GG+ WI+R   G  +L G +F+ 
Subjt:  WSLWNQRNKVMFNAGKLKPEDLVTNVD--YVFCVYQSSKPTA-------------------WKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLGGCKFIS

Query:  YNWPVKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDS
            VK LEA AI EGL+ +   G  +   L +E DS
Subjt:  YNWPVKFLEAYAIREGLKEVLAWGKSQTPSLIVEIDS

A0A6J1DSV1 uncharacterized protein LOC1110236087.6e-0626.36Show/hide
Query:  WSLWNQRNKVMFNAGKLKPEDLVTNVD-YVF-----------------------------CVYQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKP
        W +W  RNK +F     +  D+   +D Y+                                ++     +WKLNTD AW +  N  GG+ WI+RD  G+ 
Subjt:  WSLWNQRNKVMFNAGKLKPEDLVTNVD-YVF-----------------------------CVYQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKP

Query:  LLGGCKFISYNWPVKFLEAYAIREGLKEV
        +   C+ I     + +LE  AI EGL+ +
Subjt:  LLGGCKFISYNWPVKFLEAYAIREGLKEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGTTTGTGGAATCAAAGAAATAAAGTCATGTTCAATGCAGGAAAGTTAAAGCCTGAGGACCTTGTAACGAACGTCGATTATGTTTTTTGCGTTTATCAAAGCTC
GAAGCCGACCGCTTGGAAACTCAATACCGATGTAGCGTGGTCCAGTAAGCTGAATCGTGGTGGGGGGCTGGAATGGATTGTTCGTGATTCCTTAGGGAAACCACTATTGG
GTGGTTGTAAATTCATCTCTTATAACTGGCCTGTTAAGTTTCTTGAAGCGTATGCTATTCGAGAAGGTCTGAAGGAAGTCCTTGCCTGGGGAAAGAGTCAGACCCCGTCT
CTGATCGTGGAAATAGATTCGCGGAGGTTATTTCGCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGTTTGTGGAATCAAAGAAATAAAGTCATGTTCAATGCAGGAAAGTTAAAGCCTGAGGACCTTGTAACGAACGTCGATTATGTTTTTTGCGTTTATCAAAGCTC
GAAGCCGACCGCTTGGAAACTCAATACCGATGTAGCGTGGTCCAGTAAGCTGAATCGTGGTGGGGGGCTGGAATGGATTGTTCGTGATTCCTTAGGGAAACCACTATTGG
GTGGTTGTAAATTCATCTCTTATAACTGGCCTGTTAAGTTTCTTGAAGCGTATGCTATTCGAGAAGGTCTGAAGGAAGTCCTTGCCTGGGGAAAGAGTCAGACCCCGTCT
CTGATCGTGGAAATAGATTCGCGGAGGTTATTTCGCTTTTGA
Protein sequenceShow/hide protein sequence
MWSLWNQRNKVMFNAGKLKPEDLVTNVDYVFCVYQSSKPTAWKLNTDVAWSSKLNRGGGLEWIVRDSLGKPLLGGCKFISYNWPVKFLEAYAIREGLKEVLAWGKSQTPS
LIVEIDSRRLFRF