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Tan0018556 (gene) of Snake gourd v1 genome

Gene IDTan0018556
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionArabinogalactan protein 40
Genome locationLG03:41842996..41843542
RNA-Seq ExpressionTan0018556
SyntenyTan0018556
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD29812.1 TPA_asm: hypothetical protein HUJ06_031280 [Nelumbo nucifera]4.0e-0649.3Show/hide
Query:  MARVFISNTFLVAALILAVFSAGSLVSGLGD-DFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH
        MA+V +S T ++  ++  + +A + VS  GD + AP+PAP+  +GS F+LPVSGA++CSSLLLSLL L++H
Subjt:  MARVFISNTFLVAALILAVFSAGSLVSGLGD-DFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH

KAG6743831.1 hypothetical protein POTOM_052534 [Populus tomentosa]5.8e-0555Show/hide
Query:  LVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH
        LV  L++A F+A   VSG   + APAPAP  +AG+GFSLPVSGA+V  SL++SLL  ++H
Subjt:  LVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH

KAG6769237.1 hypothetical protein POTOM_024855 [Populus tomentosa]1.7e-0451.43Show/hide
Query:  ARVFISNTFLVAALILAVFSAGSLVSGL-GDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH
        A+V IS  FL+  +I    +A ++VSG   +  APAPAP  EAG+GFSLPVSGA+V  SL++SLL  ++H
Subjt:  ARVFISNTFLVAALILAVFSAGSLVSGL-GDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH

KAG9160337.1 hypothetical protein Leryth_008755 [Lithospermum erythrorhizon]2.2e-0450.82Show/hide
Query:  FLVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH
        FLV ALI A       VS    DFA APAP+ +AG+GFS+P+SGA++ +SL+LS++ L++H
Subjt:  FLVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH

PNS97965.1 hypothetical protein POPTR_016G052200 [Populus trichocarpa]1.7e-0453.33Show/hide
Query:  LVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH
        LV  L++A F+A   VS    + APAPAP  +AG+GFSLPVSGA+V  SL++SLL  ++H
Subjt:  LVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH

TrEMBL top hitse value%identityAlignment
A0A6A1V378 Uncharacterized protein1.4e-0450.72Show/hide
Query:  MARVFISNTFLVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIR
        MA+V IS   L+  L++AV SA ++VS L  + APAPAP  + G+ FS+PVS  V+ SSL LSLL L++
Subjt:  MARVFISNTFLVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIR

A0A7J7CQZ1 Uncharacterized protein1.1e-0450Show/hide
Query:  LVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH
        +V   ++++F+A   VS    D APAPAP+++ G+G+SL +SGAV+CSSL+LSLL L++H
Subjt:  LVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH

F6HL53 Uncharacterized protein9.7e-0651.43Show/hide
Query:  MARVFISNTFLVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH
        MA+V I+  F++   ++A+FSA + VS L  D +PAPAP+ +AGS FSLP+SGAVV SSL+ SLL  +++
Subjt:  MARVFISNTFLVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH

F6HL54 Uncharacterized protein3.7e-0551.43Show/hide
Query:  MARVFISNTFLVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH
        MA+V I+   L+   ++A+FSA + VS L  D +PAPAP+ +AGS FSLP+SGAVV SSL+ SLL  +++
Subjt:  MARVFISNTFLVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH

U5FKQ0 Uncharacterized protein8.2e-0553.33Show/hide
Query:  LVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH
        LV  L++A F+A   VS    + APAPAP  +AG+GFSLPVSGA+V  SL++SLL  ++H
Subjt:  LVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGAGTTTTCATCTCCAACACCTTCCTTGTCGCCGCCTTGATCCTCGCCGTCTTCTCCGCCGGCAGCCTGGTTTCTGGACTTGGCGATGACTTCGCTCCGGCGCC
TGCTCCGGCGCGTGAGGCCGGATCTGGCTTCTCTCTTCCCGTCTCCGGCGCCGTCGTTTGCTCCTCGCTTCTCCTCTCTCTTCTTCACCTTATCAGGCATTGA
mRNA sequenceShow/hide mRNA sequence
ATTTCCGATCAATCTCTCTCGCAATCTCTCTCTCAATCTCTCTCAACTTTCCGATCCATTCTTCTCCAATGGCGAGAGTTTTCATCTCCAACACCTTCCTTGTCGCCGCC
TTGATCCTCGCCGTCTTCTCCGCCGGCAGCCTGGTTTCTGGACTTGGCGATGACTTCGCTCCGGCGCCTGCTCCGGCGCGTGAGGCCGGATCTGGCTTCTCTCTTCCCGT
CTCCGGCGCCGTCGTTTGCTCCTCGCTTCTCCTCTCTCTTCTTCACCTTATCAGGCATTGATTTTAGCCTCTTCGTTGATGAAATGTGATGTTTCCGGCCTCCGGCCTCT
GGCTGCAGCTCACCGGAATGTGGTTCTTACGGCGATCTGTTGTATTTTGGGTTTTGTTGAGGTTATTTTATAAAAATTTATATACATGCAATTCTTGAGTGATTATTGGG
AAATTCTTTCTTTCATTTTTATTTATGGAAATGTTATGTTGTATCTACTTTGACGTGGCATTGGCATTTTTTCTATACTATGAAATAAATTATTATCTTTCATTAAA
Protein sequenceShow/hide protein sequence
MARVFISNTFLVAALILAVFSAGSLVSGLGDDFAPAPAPAREAGSGFSLPVSGAVVCSSLLLSLLHLIRH