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Tan0018598 (gene) of Snake gourd v1 genome

Gene IDTan0018598
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG01:13531656..13532054
RNA-Seq ExpressionTan0018598
SyntenyTan0018598
Gene Ontology termsGO:0009059 - macromolecule biosynthetic process (biological process)
GO:0010467 - gene expression (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044271 - cellular nitrogen compound biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3622233.1 hypothetical protein FXO38_31400 [Capsicum annuum]3.9e-3466.13Show/hide
Query:  KIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGISTA
        K ++EKFDG+ NF +WQVQVKD+LIQSGLHKALK RP+    EK + D + +E   SS+ S+KS +SDEEW+ELD++ AS IRL LAKN+LANV G+ST 
Subjt:  KIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGISTA

Query:  KELWEKLEAVYQAKSISNRLYLKE
        KELWEKLE +YQ KSISNRLYLKE
Subjt:  KELWEKLEAVYQAKSISNRLYLKE

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]2.3e-3463.36Show/hide
Query:  SSFMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILAN
        S   + ++ +VEKFDG+ NF LWQVQVKD+LIQSGLHKALKGRP+   PE +S D   T+   S     +S MSDE+W++LDLR ASAIRL LAKN+LAN
Subjt:  SSFMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILAN

Query:  VHGISTAKELWEKLEAVYQAKSISNRLYLKE
        +HGISTAK+LWEKLE +YQ K +SNR+YLKE
Subjt:  VHGISTAKELWEKLEAVYQAKSISNRLYLKE

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.1e-3364.57Show/hide
Query:  SPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGI
        SP++ DVEK+DG+ NF LWQVQVKD+LIQSGLHKAL+G+P+            P  S  SS  SK     DEEW++LDLR ASAIRL LAKN+LANVHGI
Subjt:  SPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGI

Query:  STAKELWEKLEAVYQAKSISNRLYLKE
        STAK+LWEKLE +YQ K I NRLYLKE
Subjt:  STAKELWEKLEAVYQAKSISNRLYLKE

KAF7802225.1 cytochrome p450 [Senna tora]1.1e-3363.64Show/hide
Query:  MSSFMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILA
        MS F S VK DVEKFDG+ NF LWQVQVKD+LIQSGLHKAL+G+ S    EK                  +SSMSD +W+ELDLR AS IRL+LAKN+LA
Subjt:  MSSFMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILA

Query:  NVHGISTAKELWEKLEAVYQAKSISNRLYLKE
        NV GISTAKELW+KLE +YQAK ISN L LKE
Subjt:  NVHGISTAKELWEKLEAVYQAKSISNRLYLKE

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]4.2e-4982.71Show/hide
Query:  MSSFMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTE-SGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNIL
        MS FMSPVKIDVEKFDG  NF LWQVQVKD+LIQS LHKALKGRPS G  EKLS DG P E SGGSSRGSKKSSMS E+W+E+DLR ASAIR +LAKNIL
Subjt:  MSSFMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTE-SGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNIL

Query:  ANVHGISTAKELWEKLEAVYQAKSISNRLYLKE
        ANVH ISTAKELWEKLEA+YQAK ISNRLYLKE
Subjt:  ANVHGISTAKELWEKLEAVYQAKSISNRLYLKE

TrEMBL top hitse value%identityAlignment
A0A2G2YJH4 Uncharacterized protein1.0e-3262.79Show/hide
Query:  FMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVH
        +M   K ++EKFDG+ NF LWQVQVKD+LIQSGLHKALK RP+ G      GD D ++   SS  S+KS +SDEEW+ELD++V S IRL LAK +L NV 
Subjt:  FMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVH

Query:  GISTAKELWEKLEAVYQAKSISNRLYLKE
        G+ST K+LWEKLE +YQ KSISNRLYLKE
Subjt:  GISTAKELWEKLEAVYQAKSISNRLYLKE

A0A6A2YS90 Transcription initiation factor IIA subunit 21.7e-3263.71Show/hide
Query:  KIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGISTA
        + D+EKFDG+ NF LWQVQVKD+LIQSGL+KALKG+P+      LS   +P +   SS    KS MS+EEW+ELD+R AS IRL LAKN+LANV   S+ 
Subjt:  KIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGISTA

Query:  KELWEKLEAVYQAKSISNRLYLKE
        KELWEKLE +YQAKS+SNRLYLKE
Subjt:  KELWEKLEAVYQAKSISNRLYLKE

A0A6A3BK59 CCHC-type domain-containing protein1.7e-3263.71Show/hide
Query:  KIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGISTA
        + D+EKFDG+ NF LWQVQVKD+LIQSGL+KALKG+P+      LS   +P +   SS    KS MS+EEW+ELD+R AS IRL LAKN+LANV   S+ 
Subjt:  KIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGISTA

Query:  KELWEKLEAVYQAKSISNRLYLKE
        KELWEKLE +YQAKS+SNRLYLKE
Subjt:  KELWEKLEAVYQAKSISNRLYLKE

A0A6A3CWI3 CCHC-type domain-containing protein1.7e-3263.71Show/hide
Query:  KIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGISTA
        + D+EKFDG+ NF LWQVQVKD+LIQSGL+KALKG+P+      LS   +P +   SS    KS MS+EEW+ELD+R AS IRL LAKN+LANV   S+ 
Subjt:  KIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGISTA

Query:  KELWEKLEAVYQAKSISNRLYLKE
        KELWEKLE +YQAKS+SNRLYLKE
Subjt:  KELWEKLEAVYQAKSISNRLYLKE

A0A6J1CG82 uncharacterized protein LOC1110105212.1e-4982.71Show/hide
Query:  MSSFMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTE-SGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNIL
        MS FMSPVKIDVEKFDG  NF LWQVQVKD+LIQS LHKALKGRPS G  EKLS DG P E SGGSSRGSKKSSMS E+W+E+DLR ASAIR +LAKNIL
Subjt:  MSSFMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTE-SGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNIL

Query:  ANVHGISTAKELWEKLEAVYQAKSISNRLYLKE
        ANVH ISTAKELWEKLEA+YQAK ISNRLYLKE
Subjt:  ANVHGISTAKELWEKLEAVYQAKSISNRLYLKE

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-1738.28Show/hide
Query:  MSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHG
        MS VK +V KF+G   F  WQ +++D+LIQ GLHK L              D D           K  +M  E+W +LD R ASAIRL+L+ +++ N+  
Subjt:  MSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHG

Query:  ISTAKELWEKLEAVYQAKSISNRLYLKE
          TA+ +W +LE++Y +K+++N+LYLK+
Subjt:  ISTAKELWEKLEAVYQAKSISNRLYLKE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCTTTATGAGTCCAGTAAAGATTGATGTGGAGAAATTTGACGGAAAGACGAACTTTCGCCTGTGGCAAGTGCAAGTCAAAGATATGCTGATACAATCTGGGTT
ACACAAGGCTTTGAAGGGAAGACCAAGTTGTGGTGTTCCTGAAAAGTTAAGCGGTGATGGTGATCCAACGGAGTCCGGTGGTTCCAGCAGAGGTTCTAAGAAGTCCAGCA
TGAGCGATGAAGAATGGGATGAATTAGATTTGAGAGTTGCAAGTGCAATCAGACTAAATTTGGCTAAGAATATTCTTGCAAATGTGCATGGAATTTCGACAGCCAAAGAG
CTTTGGGAGAAGCTTGAAGCGGTATATCAGGCAAAGAGCATCTCAAATCGGTTGTACCTGAAGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCTTTATGAGTCCAGTAAAGATTGATGTGGAGAAATTTGACGGAAAGACGAACTTTCGCCTGTGGCAAGTGCAAGTCAAAGATATGCTGATACAATCTGGGTT
ACACAAGGCTTTGAAGGGAAGACCAAGTTGTGGTGTTCCTGAAAAGTTAAGCGGTGATGGTGATCCAACGGAGTCCGGTGGTTCCAGCAGAGGTTCTAAGAAGTCCAGCA
TGAGCGATGAAGAATGGGATGAATTAGATTTGAGAGTTGCAAGTGCAATCAGACTAAATTTGGCTAAGAATATTCTTGCAAATGTGCATGGAATTTCGACAGCCAAAGAG
CTTTGGGAGAAGCTTGAAGCGGTATATCAGGCAAAGAGCATCTCAAATCGGTTGTACCTGAAGGAGTAG
Protein sequenceShow/hide protein sequence
MSSFMSPVKIDVEKFDGKTNFRLWQVQVKDMLIQSGLHKALKGRPSCGVPEKLSGDGDPTESGGSSRGSKKSSMSDEEWDELDLRVASAIRLNLAKNILANVHGISTAKE
LWEKLEAVYQAKSISNRLYLKE