CuGenDBv2

Gene ID	Tan0018599
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	LG11:43429671..43429988
RNA-Seq Expression	Tan0018599
Synteny	Tan0018599
Gene Ontology terms	GO:0006468 - protein phosphorylation (biological process) GO:0006952 - defense response (biological process) GO:0007165 - signal transduction (biological process) GO:0015074 - DNA integration (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003953 - NAD+ nucleosidase activity (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043531 - ADP binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ABO36622.1 copia LTR rider [Solanum lycopersicum]

6.4e-40

81.91

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MNQTLLERARCMLSN GL RRFW EAV+TACYLINRGPHTGI CKTP E+WSGK ADYS L+ FGC AYYHV+EGKLEPRAKKGVF+G+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

EDR7571793.1 transposase family protein [Salmonella enterica subsp. enterica serovar Newport]

6.4e-40

81.91

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MNQTLLERARCMLSN GL RRFW EAV+TACYLINRGPHTGI CKTP E+WSGK ADYS L+ FGC AYYHV+EGKLEPRAKKGVF+G+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

KAG7544152.1 Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis thaliana x Arabidopsis arenosa]

7.1e-39

79.79

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MNQTLLERARCMLSN GL +RFW EAVNTACYLINR PHTGI CKTP E+WSGK ADYS L++FGC  YYHVNEGKLEPRA+KGVF+G+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

KAG7558728.1 Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa]

4.6e-38

76.6

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MNQTLLERARCMLSN GL +RFW EAVNT CYLINRGPHTGI C+TP E+WS K ADYS L++FGC  YYH+NEGKLEPRA+KGVF+G+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

KYP50611.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]

3.0e-37

76.6

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MN+TLLERARC+LSN GL+R FW EA++T CYLINR P T IDCKTP EVWS KPA+YS LRVFGC AYYHVNEGKLEPR+KKG+FMG+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

TrEMBL top hits

e value

%identity

Alignment

A0A151QLX0 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)

1.2e-36

76.6

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MN+TLLERARC+LSN GL+R FW EAV+T CYLINR P T IDCKT  EVWS KPA+YS LRVFGC AYYHVNEGKLEPR+KKG+FMG+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

A0A151R8A9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-37

77.66

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MN+TLLERARC+LSN GL+R FW EAV+T CYLINR P T IDCKTP EVWS KPA+YS LRVFGC AYYHVNEGKLEPR+KKG+FMG+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

A0A151RYD5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.9e-36

72.34

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MN+TLLE+ARC+LSN GLT+ FW +A+NTACYL+NR P T I CKTP EVWS KPA+YS LR+FGC AYYHVNEGKLEPR++KG+FMG+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

A0A151S790 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)

1.4e-37

76.6

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MN+TLLERARC+LSN GL+R FW EA++T CYLINR P T IDCKTP EVWS KPA+YS LRVFGC AYYHVNEGKLEPR+KKG+FMG+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

B1N668 Copia LTR rider

3.1e-40

81.91

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK
        MNQTLLERARCMLSN GL RRFW EAV+TACYLINRGPHTGI CKTP E+WSGK ADYS L+ FGC AYYHV+EGKLEPRAKKGVF+G+GD +K
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.3e-14

43.01

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGI--DCKTPYEVWSGKPADYSFLRVFGCIAYYHV--NEGKLEPRAKKGVFMGF
        M +T+ E+AR M+S   L + FW EAV TA YLINR P   +    KTPYE+W  K      LRVFG   Y H+   +GK + ++ K +F+G+
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGI--DCKTPYEVWSGKPADYSFLRVFGCIAYYHV--NEGKLEPRAKKGVFMGF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.2e-18

45.26

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHV---NEGKLEPRAKKGVFMGFGDE
        MN+T++E+ R ML    L + FW EAV TACYLINR P   +  + P  VW+ K   YS L+VFGC A+ HV      KL+ ++   +F+G+GDE
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHV---NEGKLEPRAKKGVFMGFGDE

P92512 Uncharacterized mitochondrial protein AtMg00710

1.7e-19

51.19

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKG
        MN+T++E+ R ML   GL + F  +A NTA ++IN+ P T I+   P EVW      YS+LR FGC+AY H +EGKL+PRAKKG
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKG

Arabidopsis top hits

e value

%identity

Alignment

ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.2e-20

51.19

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Query:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKG
        MN+T++E+ R ML   GL + F  +A NTA ++IN+ P T I+   P EVW      YS+LR FGC+AY H +EGKL+PRAKKG
Subjt:  MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKG

Sequences

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CDS sequence

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ATGAATCAGACACTGTTAGAGAGAGCAAGATGCATGCTCTCTAATGTTGGGTTAACTAGAAGATTTTGGGTAGAAGCGGTAAATACGGCATGTTATCTGATTAACCGTGG
ACCTCACACAGGTATTGATTGCAAAACACCTTATGAGGTGTGGTCTGGTAAGCCTGCAGATTATTCTTTTTTAAGAGTTTTTGGTTGTATTGCTTATTATCATGTCAATG
AGGGTAAGTTAGAACCGAGAGCTAAGAAGGGTGTCTTTATGGGTTTTGGAGATGAGTTAAAGGATATAGAATCTGGTCACCTTCTGAAAATAGGGTGA

mRNA sequence

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Protein sequence

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MNQTLLERARCMLSNVGLTRRFWVEAVNTACYLINRGPHTGIDCKTPYEVWSGKPADYSFLRVFGCIAYYHVNEGKLEPRAKKGVFMGFGDELKDIESGHLLKIG

Tan0018599 (gene) of Snake gourd v1 genome