CuGenDBv2

Gene ID	Tan0018625
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG07:29667767..29668362
RNA-Seq Expression	Tan0018625
Synteny	Tan0018625
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-37

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-37

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-37

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-37

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-37

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

8.2e-38

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

A0A5A7TU93 Gag/pol protein

8.2e-38

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

A0A5A7TWB9 Gag/pol protein

8.2e-38

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

A0A5D3CPJ6 Gag/pol protein

8.2e-38

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

A0A5D3CSZ6 Gag/pol protein

8.2e-38

45.45

Show/hide

Query:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG
        M+S+ +++L A KL G N   WKN +NT+L++DDL++VL EECPQVP + A+R VR+ Y   ++   + R+                           Q 
Subjt:  MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRS------------------------TCWQG

Query:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI
        MFGQ   Q +H+ LKYI+N+RM +G SVR+HVL+MMVHFN+AE NGA IDE+S   +           FRSN VMNK+ + LT+LLNELQTF+SL+KI
Subjt:  MFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLDMMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCGAAAAAGTTAACCGGAGAGAATATGATGAAATGGAAAAACAAACTCAACACTATATTGGTAGTGGATGATTTGAAGTA
TGTGCTAACTGAGGAGTGTCCTCAGGTGCCATGCTCGAAGGCGTCACGAAATGTTCGTGATGCATATGTCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGCT
GGCAAGGTATGTTTGGACAACAACCCACACAGGCCCGACATAATGTCCTGAAGTACATATTCAACTCGAGGATGCCAAAGGGTACATCTGTTCGGGATCATGTCCTAGAT
ATGATGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCGATGAGTCGAGCAGTCGACTTTATTCAAAACTCTTCCGAGATAGTTTTTCTGCGAGCTTTAGAAG
TAATACTGTTATGAACAAGCTTACTTTTAATCTTACCTCCCTTCTGAATGAACTCCAAACCTTTCAGTCTTTGATTAAAATTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSSSIISLLGAKKLTGENMMKWKNKLNTILVVDDLKYVLTEECPQVPCSKASRNVRDAYVDGSRPMIRPRSTCWQGMFGQQPTQARHNVLKYIFNSRMPKGTSVRDHVLD
MMVHFNIAESNGASIDESSSRLYSKLFRDSFSASFRSNTVMNKLTFNLTSLLNELQTFQSLIKI

Tan0018625 (gene) of Snake gourd v1 genome