CuGenDBv2

Gene ID	Tan0018636
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG07:37707383..37707790
RNA-Seq Expression	Tan0018636
Synteny	Tan0018636
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032020.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-44

76.12

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Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL++IVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

4.2e-44

75.37

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Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL+++VHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

4.2e-44

75.37

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Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL+++VHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

4.2e-44

75.37

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Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL+++VHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

4.2e-44

75.37

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Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL+++VHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

2.0e-44

75.37

Show/hide

Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL+++VHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

A0A5A7SMN4 Gag/pol protein

7.0e-45

76.12

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Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL++IVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

A0A5A7TU93 Gag/pol protein

2.0e-44

75.37

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Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL+++VHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

A0A5A7V4M1 Gag/pol protein

2.0e-44

75.37

Show/hide

Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL+++VHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

A0A5D3CPJ6 Gag/pol protein

2.0e-44

75.37

Show/hide

Query:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG
        MFGQ   QI+H +LKY+YN+RM EG+SVREHVL+++VHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLNE+QTF+SLMK KG
Subjt:  MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKG

Query:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+FH+GS+SGTKS  SSSG KK
Subjt:  QADGEANLFGHSRRFHKGSSSGTKSCSSSSGLKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTGGACAACCGTTTGGACAGATTCGGCACAAATCTCTCAAATACGTTTATAACTCCCGTATGATGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATTGT
CCACTTCAACGTGGCTGAGATGAACGGAGCGGTCATTGACGAGCAGAGTCAGGTATCGTTCATCTTGGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAGCAATGCGG
TGATGAACAAGATAGAGTATAACCTGACTACTCTCCTTAATGAAGTACAAACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGGCAAATCTGTTTGGC
CATTCCAGAAGGTTCCATAAAGGTTCATCCTCTGGGACAAAGTCCTGTAGCTCATCTTCTGGGCTTAAGAAGACCTAA

mRNA sequence

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Protein sequence

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MFGQPFGQIRHKSLKYVYNSRMMEGSSVREHVLDLIVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNEVQTFQSLMKNKGQADGEANLFG
HSRRFHKGSSSGTKSCSSSSGLKKT

Tan0018636 (gene) of Snake gourd v1 genome