CuGenDBv2

Gene ID	Tan0018638
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Genome location	LG02:25946585..25949554
RNA-Seq Expression	Tan0018638
Synteny	Tan0018638
Gene Ontology terms	GO:0005635 - nuclear envelope (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR029159 - Casein Kinase 2 substrate IPR038985 - At5g43822-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004144893.1 uncharacterized protein At5g43822 isoform X2 [Cucumis sativus]

7.0e-96

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQF+NASSIIGRLQ+LQDPKN+GSLSGMDGIV+ALLAKQMESLQLSFSSI+KTMEELGNIV SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQLQQ+VGLKPSLEDCLNGL LLC MHRSEY+LKESIVSALPELFWKARNH AQDLSSL QLLVDQPNI+KEEVEF+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

XP_008447827.1 PREDICTED: uncharacterized protein At5g43822 isoform X1 [Cucumis melo]

5.9e-95

90.5

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQF+NASSIIGRLQ+LQDPKN+GSLSGMDGIV+ALL KQMESLQLSFSSI+KTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGL +LC+MHRSEY LKESIVSALPELFWKARNH AQDLSSL QLLVDQPNI+KEEV+F+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

XP_022928127.1 uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata]

1.2e-98

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQF NASSIIGRLQVLQDP NYGSLSGMDGIVDALLAKQMESLQL FSSI KTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQL+KGGSNQPS KQLQQRVGLKPSLEDCLNGL LLCDMHRSEYHLKES+VSALPELFWK RNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

XP_022989465.1 uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima]

1.8e-96

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQF NASSIIGRLQVLQDP NYGSLSGMDGIVDALLAKQMESLQL FSSI KTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQL+KGGSNQPS KQLQQRVGLKPSLEDCLNGL LLCDMHRSEY+LKES+VSALP+LFWK RNHSAQDLSSLQQLLVDQPNIRKEEVEF+FD ILVPEA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

XP_023529794.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo]

1.3e-94

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQF NASSIIGRLQVLQDPKNYGSLS   GIVDALLAKQMESLQL FSSI KTM ELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQL+KGGSNQPS KQLQQRVGLKPSLEDCLNGL LLCDMHRSEYHLKES+VS+LPELFWK RNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4X9 Uncharacterized protein

3.4e-96

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQF+NASSIIGRLQ+LQDPKN+GSLSGMDGIV+ALLAKQMESLQLSFSSI+KTMEELGNIV SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQLQQ+VGLKPSLEDCLNGL LLC MHRSEY+LKESIVSALPELFWKARNH AQDLSSL QLLVDQPNI+KEEVEF+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

A0A1S3BIA7 uncharacterized protein At5g43822 isoform X1

2.9e-95

90.5

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQF+NASSIIGRLQ+LQDPKN+GSLSGMDGIV+ALL KQMESLQLSFSSI+KTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGL +LC+MHRSEY LKESIVSALPELFWKARNH AQDLSSL QLLVDQPNI+KEEV+F+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

A0A6J1C552 uncharacterized protein At5g43822 isoform X1

2.4e-94

89.5

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQV LIS F+NAS IIGRLQ+LQD KNYGSLSG+DGIVDALLAKQMESLQL+FSSI KTMEELGN+VRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQLQQRVGLKPS+EDCLNGL LLCDMHR+EYHLKES+VSALP+LFWKA NHSAQDLSSLQQLL+DQPNI+KEEVEF+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

A0A6J1EJ12 uncharacterized protein At5g43822 isoform X3

5.6e-99

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQF NASSIIGRLQVLQDP NYGSLSGMDGIVDALLAKQMESLQL FSSI KTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQL+KGGSNQPS KQLQQRVGLKPSLEDCLNGL LLCDMHRSEYHLKES+VSALPELFWK RNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

A0A6J1JMF9 uncharacterized protein At5g43822 isoform X2

8.9e-97

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQF NASSIIGRLQVLQDP NYGSLSGMDGIVDALLAKQMESLQL FSSI KTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQL+KGGSNQPS KQLQQRVGLKPSLEDCLNGL LLCDMHRSEY+LKES+VSALP+LFWK RNHSAQDLSSLQQLLVDQPNIRKEEVEF+FD ILVPEA
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

SwissProt top hits

e value

%identity

Alignment

Q6NPG7 Uncharacterized protein At5g43822

5.0e-44

48.74

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Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEA+++K+QQ+FRK K+EM+ W+ LQVR +S F+NASSII RLQ +Q+  +YG+L  + GI DA++ +QM  L+    S++  MEE    V + EK++RD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE
        G QL +  S++   +++++R+G+KP + DCL GL++L DMH+SEYHLK SI+S L  L  K    S  DL++LQ L+VDQPNI K+EV+ IFD I   E
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE

Arabidopsis top hits

e value

%identity

Alignment

AT5G43822.1 Pentatricopeptide repeat (PPR) superfamily protein

3.5e-45

48.74

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD
        MEA+++K+QQ+FRK K+EM+ W+ LQVR +S F+NASSII RLQ +Q+  +YG+L  + GI DA++ +QM  L+    S++  MEE    V + EK++RD
Subjt:  MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE
        G QL +  S++   +++++R+G+KP + DCL GL++L DMH+SEYHLK SI+S L  L  K    S  DL++LQ L+VDQPNI K+EV+ IFD I   E
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE

Sequences

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CDS sequence

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ATGGAGGCCATGGTGAAAAAGTATCAGCAAAGATTCAGAAAGTTCAAGGATGAAATGGATCTCTGGGACGAGCTTCAAGTTCGCTTGATTTCACAGTTCAAAAATGCTTC
CTCCATCATCGGGAGGTTGCAGGTGCTTCAAGATCCTAAGAATTATGGTAGCCTGTCTGGCATGGATGGCATTGTAGATGCGCTATTGGCAAAGCAGATGGAATCCTTGC
AACTTAGTTTCTCGTCTATTAGGAAAACAATGGAAGAACTTGGGAATATTGTCCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAGTCAAAGGTGGTTCCAAT
CAGCCATCAATAAAACAACTACAGCAAAGAGTTGGTTTAAAACCCAGTCTTGAAGATTGCTTGAACGGGTTAACGCTTCTATGTGACATGCATCGCTCTGAGTACCATCT
TAAAGAATCTATAGTCTCAGCACTTCCAGAACTTTTCTGGAAAGCCAGGAATCATAGTGCCCAAGATCTCAGCTCCTTACAACAACTTTTGGTTGATCAACCTAACATTC
GGAAAGAGGAAGTTGAATTCATCTTTGATACCATACTGGTCCCTGAAGCCTAG

mRNA sequence

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Protein sequence

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MEAMVKKYQQRFRKFKDEMDLWDELQVRLISQFKNASSIIGRLQVLQDPKNYGSLSGMDGIVDALLAKQMESLQLSFSSIRKTMEELGNIVRSMEKIYRDGKQLVKGGSN
QPSIKQLQQRVGLKPSLEDCLNGLTLLCDMHRSEYHLKESIVSALPELFWKARNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Tan0018638 (gene) of Snake gourd v1 genome