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Tan0018639 (gene) of Snake gourd v1 genome

Gene IDTan0018639
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG04:25124179..25125127
RNA-Seq ExpressionTan0018639
SyntenyTan0018639
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035161.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-0756Show/hide
Query:  MGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN
        MG + TFEE H  + DS+ MN +NI FVETT+ WTEWR+++AN M+ +WN
Subjt:  MGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN

KAA0048281.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-0750Show/hide
Query:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTCQDERWRWFE--MMGLDPTFEEAHTSDPD
        EI+S HFN VL  ++RLH  LLK P PV N C D+RWRWFE  +  LD T+ + +    D
Subjt:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTCQDERWRWFE--MMGLDPTFEEAHTSDPD

KAA0049607.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-0858Show/hide
Query:  MGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN
        MG + TFEE H S+ DS+ MN +NI FVETT+ WTEWR+++AN M+ +WN
Subjt:  MGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN

KAF3973363.1 hypothetical protein CMV_003208 [Castanea mollissima]6.1e-1339.56Show/hide
Query:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTCQDERWRWFEMMGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNW
        E VS +FNAVL  ++ L+S+L K P P+   C DERW+WF+M  LDP        +  +  ++ ++I +VET+DAW++WR+ +   M+  W
Subjt:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTCQDERWRWFEMMGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNW

XP_008462938.1 PREDICTED: uncharacterized protein LOC103501200 [Cucumis melo]2.0e-1132.87Show/hide
Query:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTC------------QDERWRW---------------------------------------FEMMGLDPTF
        EIVS HFN VL+ ++RLH +LLK P PV+++C              +R RW                                       F  +  + TF
Subjt:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTC------------QDERWRW---------------------------------------FEMMGLDPTF

Query:  EEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN
        EE H  + DS+ MN +NI F+ETT+  TEWR+ +AN M+ +WN
Subjt:  EEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN

TrEMBL top hitse value%identityAlignment
A0A1S3CI20 uncharacterized protein LOC1035012009.5e-1232.87Show/hide
Query:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTC------------QDERWRW---------------------------------------FEMMGLDPTF
        EIVS HFN VL+ ++RLH +LLK P PV+++C              +R RW                                       F  +  + TF
Subjt:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTC------------QDERWRW---------------------------------------FEMMGLDPTF

Query:  EEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN
        EE H  + DS+ MN +NI F+ETT+  TEWR+ +AN M+ +WN
Subjt:  EEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN

A0A5A7T0P1 Retrotransposon protein4.9e-0856Show/hide
Query:  MGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN
        MG + TFEE H  + DS+ MN +NI FVETT+ WTEWR+++AN M+ +WN
Subjt:  MGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN

A0A5A7T5Y5 Retrotransposon protein1.1e-0750Show/hide
Query:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTCQDERWRWFE--MMGLDPTFEEAHTSDPD
        EI+S HFN VL  ++RLH  LLK P PV N C D+RWRWFE  +  LD T+ + +    D
Subjt:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTCQDERWRWFE--MMGLDPTFEEAHTSDPD

A0A5A7U3Z5 Retrotransposon protein6.3e-0850Show/hide
Query:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTCQDERWRWFE--MMGLDPTFEEAHTSDPD
        EI+S HFN VL  ++RLH  LLK P PV N C D+RWRWFE  +  LD T+ + +    D
Subjt:  EIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTCQDERWRWFE--MMGLDPTFEEAHTSDPD

A0A5A7U5I3 Retrotransposon protein1.7e-0858Show/hide
Query:  MGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN
        MG + TFEE H S+ DS+ MN +NI FVETT+ WTEWR+++AN M+ +WN
Subjt:  MGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCGAGATCGTGTCCGCACACTTCAACGCCGTCCTAAGTGGGATAGTAAGACTTCACTCGGTGTTACTGAAGGCACCTTCACCAGTTTCAAATACGTGTCAGGACGA
GCGATGGCGATGGTTCGAGATGATGGGCCTGGACCCCACATTCGAGGAGGCACATACAAGTGACCCTGATTCAAATGGGATGAATACAGACAACATTGAGTTTGTAGAGA
CAACAGATGCCTGGACTGAATGGAGGGAACATATCGCAAACCACATGTGGATGAATTGGAATGGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCGAGATCGTGTCCGCACACTTCAACGCCGTCCTAAGTGGGATAGTAAGACTTCACTCGGTGTTACTGAAGGCACCTTCACCAGTTTCAAATACGTGTCAGGACGA
GCGATGGCGATGGTTCGAGATGATGGGCCTGGACCCCACATTCGAGGAGGCACATACAAGTGACCCTGATTCAAATGGGATGAATACAGACAACATTGAGTTTGTAGAGA
CAACAGATGCCTGGACTGAATGGAGGGAACATATCGCAAACCACATGTGGATGAATTGGAATGGGAATTGA
Protein sequenceShow/hide protein sequence
MREIVSAHFNAVLSGIVRLHSVLLKAPSPVSNTCQDERWRWFEMMGLDPTFEEAHTSDPDSNGMNTDNIEFVETTDAWTEWREHIANHMWMNWNGN