; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0018649 (gene) of Snake gourd v1 genome

Gene IDTan0018649
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L34
Genome locationLG03:78855608..78856998
RNA-Seq ExpressionTan0018649
SyntenyTan0018649
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]3.0e-6290.32Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA
        MA ISVLS+PWVSTG + VRVPSASLVFSTGSR  CSVSLNT NN SARS LLHCSFL SSSLSCSSSFSGLSLGLDW+SK+GVGQGKGR LVVRAGKAA
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]2.7e-6392.26Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSR-SCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA
        MA ISVLSSPWVS G + VRVPSASLV STGSR SCSVSLNTANNTSARS LLHCSFL SSSLSCSSSFSGLSLGLDW+SK+GVGQGKGRSLVVRAGKAA
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSR-SCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_022142342.1 50S ribosomal protein L34, chloroplastic [Momordica charantia]8.1e-6089.03Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA
        MA ISVLS+PWV +G + VRVPSASLV STGSRS CSVSLNTANNTSARS LL CSFL SSSLSCSSSFSG SLGLDWNS+I VGQGKGRSLVVRAGKAA
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGKGA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_023003306.1 50S ribosomal protein L34, chloroplastic-like [Cucurbita maxima]1.4e-5687.66Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAAL
        MA ISV+SS  VST    VRVPSASLVFSTGSR+ S+SLNTANN SAR  LLHCSFL SSSLSCSSSFSGLSLGLDW+ KIGVGQGK RSLVVRAGKAAL
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAAL

Query:  CQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        CQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  CQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]3.5e-6392.9Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA
        MA ISVLSSPWVSTG   VRVPSASLV STG R  CSVSLNTANNTSARS LLHCSFLSSSSLSCSSSFSGLSLGLDW+SKIGVGQGKGRSLVVRAGKAA
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

TrEMBL top hitse value%identityAlignment
A0A0A0KI92 Uncharacterized protein1.4e-6290.32Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA
        MA ISVLS+PWVSTG + VRVPSASLVFSTGSR  CSVSLNT NN SARS LLHCSFL SSSLSCSSSFSGLSLGLDW+SK+GVGQGKGR LVVRAGKAA
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic1.3e-6392.26Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSR-SCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA
        MA ISVLSSPWVS G + VRVPSASLV STGSR SCSVSLNTANNTSARS LLHCSFL SSSLSCSSSFSGLSLGLDW+SK+GVGQGKGRSLVVRAGKAA
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSR-SCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A5D3CSJ7 50S ribosomal protein L341.3e-6392.26Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSR-SCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA
        MA ISVLSSPWVS G + VRVPSASLV STGSR SCSVSLNTANNTSARS LLHCSFL SSSLSCSSSFSGLSLGLDW+SK+GVGQGKGRSLVVRAGKAA
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSR-SCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A6J1CMH5 50S ribosomal protein L34, chloroplastic3.9e-6089.03Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA
        MA ISVLS+PWV +G + VRVPSASLV STGSRS CSVSLNTANNTSARS LL CSFL SSSLSCSSSFSG SLGLDWNS+I VGQGKGRSLVVRAGKAA
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRS-CSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGKGA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A6J1KNU0 50S ribosomal protein L34, chloroplastic-like7.0e-5787.66Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAAL
        MA ISV+SS  VST    VRVPSASLVFSTGSR+ S+SLNTANN SAR  LLHCSFL SSSLSCSSSFSGLSLGLDW+ KIGVGQGK RSLVVRAGKAAL
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAAL

Query:  CQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        CQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  CQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

SwissProt top hitse value%identityAlignment
P82244 50S ribosomal protein L34, chloroplastic1.2e-3464.29Show/hide
Query:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAAL
        MA +S+LS+       +  R PSASL F TGSR+ +  + + N  SARS  LHCSFL+ SS S SS+FSGLSLGLD  S  GV   + R  VVRAGKAAL
Subjt:  MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAAL

Query:  CQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        C TKR+RSRKSLARTHGFR RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGK A
Subjt:  CQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Q04CX6 50S ribosomal protein L348.6e-0470.59Show/hide
Query:  RKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ++ L R HGFR+RM T NGR VL RRRAKGRKVL
Subjt:  RKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q1I2H1 50S ribosomal protein L348.6e-0483.33Show/hide
Query:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ARTHGFR RM T NGRAVL RRRAKGRK L
Subjt:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q48BE9 50S ribosomal protein L348.6e-0483.33Show/hide
Query:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ARTHGFR RM T NGRAVL RRRAKGRK L
Subjt:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q9LP37 50S ribosomal protein L34, chloroplastic1.7e-3163.58Show/hide
Query:  SVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKI-GVGQGKGRSLVVRAGKAALCQT
        S L +P  S G   + VPSASL   TG R  S SL     +SA S+LLHCSFL SS +S +S FSGLS+  D +S+  G+   + R LVVRAGKAALCQT
Subjt:  SVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKI-GVGQGKGRSLVVRAGKAALCQT

Query:  KRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGK A
Subjt:  KRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Arabidopsis top hitse value%identityAlignment
AT1G29070.1 Ribosomal protein L341.2e-3263.58Show/hide
Query:  SVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKI-GVGQGKGRSLVVRAGKAALCQT
        S L +P  S G   + VPSASL   TG R  S SL     +SA S+LLHCSFL SS +S +S FSGLS+  D +S+  G+   + R LVVRAGKAALCQT
Subjt:  SVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKI-GVGQGKGRSLVVRAGKAALCQT

Query:  KRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGK A
Subjt:  KRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGGATATCAGTATTGTCGTCTCCATGGGTTTCGACCGGAGGCATGCCCGTCCGCGTCCCCTCAGCTTCACTTGTATTCTCCACTGGCTCTAGAAGTTGTTCCGT
ATCTCTAAATACCGCAAACAACACTTCCGCCCGTTCTCGACTGCTTCATTGCTCGTTTCTTTCTTCTTCCTCCCTTTCATGCTCTTCATCTTTCTCAGGTTTATCGTTGG
GTTTGGATTGGAATTCTAAAATTGGGGTCGGACAAGGGAAGGGTCGGAGCTTAGTCGTTAGGGCTGGAAAGGCTGCACTTTGTCAGACTAAAAGAAACAGGTCGCGTAAA
TCCTTAGCTCGGACTCATGGTTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGGAAGGTCCTCTGCACAAAGTCCAA
CCCAAGCAGCGGAAAGGGTGCTTAA
mRNA sequenceShow/hide mRNA sequence
GTTCATTCTCCGGAAGCTGAAAGGGGGGGAAACAGTCTAACAATGGCAGGGATATCAGTATTGTCGTCTCCATGGGTTTCGACCGGAGGCATGCCCGTCCGCGTCCCCTC
AGCTTCACTTGTATTCTCCACTGGCTCTAGAAGTTGTTCCGTATCTCTAAATACCGCAAACAACACTTCCGCCCGTTCTCGACTGCTTCATTGCTCGTTTCTTTCTTCTT
CCTCCCTTTCATGCTCTTCATCTTTCTCAGGTTTATCGTTGGGTTTGGATTGGAATTCTAAAATTGGGGTCGGACAAGGGAAGGGTCGGAGCTTAGTCGTTAGGGCTGGA
AAGGCTGCACTTTGTCAGACTAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGTTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCG
CAGACGTGCCAAGGGTAGGAAGGTCCTCTGCACAAAGTCCAACCCAAGCAGCGGAAAGGGTGCTTAAGTTTTTCTCGCTTTAACCATTTCTAGGTAAATTAGGCAGTATT
GTCTAATTCACTCTTCGAATGACTGGTCAAGATAGCTTATATTATATTAAAATGATGTTTTGTTATTCATTCATTTGAAAGTTTCTTAACTCGAATTATCAATGTTAAAT
TCAAATGACAGGACAAGACTAGCTTTTATGTGATTGATGCTTTCGCATTGTTCATTTGAAAATTTCCCCTGAACTGGAATATGTACATATTCTGAAGGCTGAGGTTTTTG
TTACTCATCTAATATTAGCCTTCTCGTCATTAATGTTTAGGTCTGAAATCTGAATCATATCAGTTTCTCTCTATATTGTTTTTGCTTGAGCTACTCTATTGCCTATTGTA
TTAAAATGTAACTGTTATTGACATTTTAACTGTTAAAATGTAACTTTCGGGGCCG
Protein sequenceShow/hide protein sequence
MAGISVLSSPWVSTGGMPVRVPSASLVFSTGSRSCSVSLNTANNTSARSRLLHCSFLSSSSLSCSSSFSGLSLGLDWNSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRK
SLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA