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Tan0018652 (gene) of Snake gourd v1 genome

Gene IDTan0018652
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG04:24035035..24035801
RNA-Seq ExpressionTan0018652
SyntenyTan0018652
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RYR32240.1 hypothetical protein Ahy_A10g046827 [Arachis hypogaea]6.9e-0627.6Show/hide
Query:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---
        S+  I +W+IW+ARN    + I PN E  +   RI    Y       IS + +  K +    IW PPP  W K+N+DA  SI T T     V  D T   
Subjt:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---

Query:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA
                              EA+ L+ +++                    + + E   I   I +I   L    F W PRE N +AHS+A
Subjt:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA

RYR36428.1 hypothetical protein Ahy_A09g041389 [Arachis hypogaea]6.9e-0627.6Show/hide
Query:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---
        S+  I +W+IW+ARN    + I PN E  +   RI    Y       IS + +  K +    IW PPP  W K+N+DA  SI T T     V  D T   
Subjt:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---

Query:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA
                              EA+ L+ +++                    + + E   I   I +I   L    F W PRE N +AHS+A
Subjt:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA

XP_015382367.1 uncharacterized protein LOC107175463 [Citrus sinensis]1.3e-0729.94Show/hide
Query:  LIILWSIWEARNKSLNSGIPPNKEDILKR----IEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSIS------TATFPPICVEVD
        + + W+IW  RN S+  G   + +    R    +E     ++P +P  +    T+ Q  ++ W PPP +W+K+N DAT  +S       A   P  +E D
Subjt:  LIILWSIWEARNKSLNSGIPPNKEDILKR----IEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSIS------TATFPPICVEVD

Query:  ATEAINLLNHVSEDLGESKSIAISIEAIASSL---GKVTFAWCPRENNSVAHSIARV
        + E ++L  +    L E   I+ +I+ I SSL    + +  + PR  NS+AHS A+V
Subjt:  ATEAINLLNHVSEDLGESKSIAISIEAIASSL---GKVTFAWCPRENNSVAHSIARV

XP_024043258.1 uncharacterized protein LOC112099955 [Citrus clementina]1.2e-0526.99Show/hide
Query:  LIILWSIWEARNKSLNSGIPPNKEDILKRIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSIS----------------TATFPP
        + + W+IW  RN S+  G   + +    R        + +    I    T  Q  ++ W PPP +W+K+N DA   +S                 A   P
Subjt:  LIILWSIWEARNKSLNSGIPPNKEDILKRIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSIS----------------TATFPP

Query:  ICVEVDATEAINLLNHVSEDLGESKSIAISIEAIASSL---GKVTFAWCPRENNSVAHSIARV
          +E D+ E ++L  +    L E   I+ +I+ I SSL    + +  + PR  NS+AHS A+V
Subjt:  ICVEVDATEAINLLNHVSEDLGESKSIAISIEAIASSL---GKVTFAWCPRENNSVAHSIARV

XP_025703912.1 uncharacterized protein LOC112805796 [Arachis hypogaea]6.9e-0627.6Show/hide
Query:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---
        S+  I +W+IW+ARN    + I PN E  +   RI    Y       IS + +  K +    IW PPP  W K+N+DA  SI T T     V  D T   
Subjt:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---

Query:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA
                              EA+ L+ +++                    + + E   I   I +I   L    F W PRE N +AHS+A
Subjt:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA

TrEMBL top hitse value%identityAlignment
A0A445B0R3 Uncharacterized protein3.3e-0627.6Show/hide
Query:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---
        S+  I +W+IW+ARN    + I PN E  +   RI    Y       IS + +  K +    IW PPP  W K+N+DA  SI T T     V  D T   
Subjt:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---

Query:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA
                              EA+ L+ +++                    + + E   I   I +I   L    F W PRE N +AHS+A
Subjt:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA

A0A445BCN9 Uncharacterized protein3.3e-0627.6Show/hide
Query:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---
        S+  I +W+IW+ARN    + I PN E  +   RI    Y       IS + +  K +    IW PPP  W K+N+DA  SI T T     V  D T   
Subjt:  SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEVDAT---

Query:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA
                              EA+ L+ +++                    + + E   I   I +I   L    F W PRE N +AHS+A
Subjt:  ----------------------EAINLLNHVS--------------------EDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA

A0A445E0D1 Uncharacterized protein2.8e-0527.78Show/hide
Query:  EAEQ--SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEV
        EA+Q  S+  I +W+IW+ARN  + + I PN E  +   RI    Y        S + ++ K +    IW PPP  W K+N+DA  S  T +     V  
Subjt:  EAEQ--SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEV

Query:  DATEAI-------------------------------NLLNHVSE--------------DLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA
        D TE I                               N+ N + E               + +   I   I  I   L    F W PRE N +AHSIA
Subjt:  DATEAI-------------------------------NLLNHVSE--------------DLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIA

A0A6J1CP26 uncharacterized protein LOC1110134129.7e-0626.7Show/hide
Query:  EAEQSKALIILWSIWEARNKSLNSGIPPNKEDILKRIEMSTYYRKPLSPISIMGKSTKNQMS--HRI-------WDPPPTDWWKLNTDATCSISTAT---
        E E+ +++II W IWE RNKS+  G+ P   DI   I+         +  ++ GKST   +    RI       W PP ++ WKLNT+A     T T   
Subjt:  EAEQSKALIILWSIWEARNKSLNSGIPPNKEDILKRIEMSTYYRKPLSPISIMGKSTKNQMS--HRI-------WDPPPTDWWKLNTDATCSISTAT---

Query:  --------------------------------------------FPPICVEVDATEAINLLNHVSEDLGESKSIAISIEAIASSLGKVTFAWCPRENNSV
                                                      PI +E D+ EAI+LL+   +D  E   +   I  +   +  V+     RE N V
Subjt:  --------------------------------------------FPPICVEVDATEAINLLNHVSEDLGESKSIAISIEAIASSLGKVTFAWCPRENNSV

Query:  AHSIAR
        AH +AR
Subjt:  AHSIAR

A0A6P4D9Y7 uncharacterized protein LOC1074875484.8e-0532.79Show/hide
Query:  EAEQ--SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEV
        EA+Q  S+  I +W+IW+ARN  + + I PN E  +   RI    Y       IS + +  K +    IW PPP  W+K+N+DA  SI T +        
Subjt:  EAEQ--SKALIILWSIWEARNKSLNSGIPPNKEDILK--RIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPICVEV

Query:  DATEAINLLNHVSEDLGESKSI
         AT ++ + +H  + LG S ++
Subjt:  DATEAINLLNHVSEDLGESKSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGACATAACACCTATCATTTGTTGGAAAGCTATCACACACCATCTCAAGGAAGCAGAACAGAGCAAAGCTTTAATAATATTATGGAGCATATGGGAAGCCAGAAA
CAAATCTCTGAACAGCGGTATTCCACCCAACAAAGAAGATATCTTGAAGAGAATAGAGATGAGTACCTATTATCGCAAGCCCCTTTCTCCTATCAGTATCATGGGCAAAT
CAACGAAGAACCAGATGAGTCACAGAATTTGGGATCCCCCACCGACCGATTGGTGGAAACTAAACACTGATGCAACCTGCTCCATCTCGACCGCAACCTTTCCCCCTATT
TGCGTTGAAGTTGACGCAACGGAAGCGATCAACCTGTTAAACCACGTATCTGAAGATCTCGGTGAATCTAAATCCATTGCAATTTCAATCGAAGCAATTGCTTCCTCTTT
AGGCAAAGTTACCTTTGCATGGTGCCCCCGTGAGAATAACTCGGTTGCCCACAGCATTGCTAGAGTTCTCTTCTCTCCCCCTCTTTTTGTCGGATCTCAATCGATCCCTC
CCCGACGAAGACGATCCTCTAGCTTGGTCTTCTCCTTTTCCTTTTTGTATCGCTTCGATCATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGACATAACACCTATCATTTGTTGGAAAGCTATCACACACCATCTCAAGGAAGCAGAACAGAGCAAAGCTTTAATAATATTATGGAGCATATGGGAAGCCAGAAA
CAAATCTCTGAACAGCGGTATTCCACCCAACAAAGAAGATATCTTGAAGAGAATAGAGATGAGTACCTATTATCGCAAGCCCCTTTCTCCTATCAGTATCATGGGCAAAT
CAACGAAGAACCAGATGAGTCACAGAATTTGGGATCCCCCACCGACCGATTGGTGGAAACTAAACACTGATGCAACCTGCTCCATCTCGACCGCAACCTTTCCCCCTATT
TGCGTTGAAGTTGACGCAACGGAAGCGATCAACCTGTTAAACCACGTATCTGAAGATCTCGGTGAATCTAAATCCATTGCAATTTCAATCGAAGCAATTGCTTCCTCTTT
AGGCAAAGTTACCTTTGCATGGTGCCCCCGTGAGAATAACTCGGTTGCCCACAGCATTGCTAGAGTTCTCTTCTCTCCCCCTCTTTTTGTCGGATCTCAATCGATCCCTC
CCCGACGAAGACGATCCTCTAGCTTGGTCTTCTCCTTTTCCTTTTTGTATCGCTTCGATCATAAATGA
Protein sequenceShow/hide protein sequence
MEDITPIICWKAITHHLKEAEQSKALIILWSIWEARNKSLNSGIPPNKEDILKRIEMSTYYRKPLSPISIMGKSTKNQMSHRIWDPPPTDWWKLNTDATCSISTATFPPI
CVEVDATEAINLLNHVSEDLGESKSIAISIEAIASSLGKVTFAWCPRENNSVAHSIARVLFSPPLFVGSQSIPPRRRRSSSLVFSFSFLYRFDHK