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Tan0018661 (gene) of Snake gourd v1 genome

Gene IDTan0018661
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG01:60625008..60625875
RNA-Seq ExpressionTan0018661
SyntenyTan0018661
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]7.6e-3465.08Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYTDSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIA     +  +      KE  WLRKFL D EVVPNMNLPITLYCDNSGA     +       
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSHREIVQRGDVIVTQIAS
        K    +    REIVQRGDVIVT+IAS
Subjt:  KAHRAQIPSHREIVQRGDVIVTQIAS
KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]7.6e-3465.08Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYTDSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIA     +  +      KE  WLRKFL D EVVPNMNLPITLYCDNSGA     +       
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSHREIVQRGDVIVTQIAS
        K    +    REIVQRGDVIVT+IAS
Subjt:  KAHRAQIPSHREIVQRGDVIVTQIAS
KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]7.6e-3465.08Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYTDSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIA     +  +      KE  WLRKFL D EVVPNMNLPITLYCDNSGA     +       
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSHREIVQRGDVIVTQIAS
        K    +    REIVQRGDVIVT+IAS
Subjt:  KAHRAQIPSHREIVQRGDVIVTQIAS
KAA0067450.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.7e-3363.08Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYTDSDFQTD DSRKS SGSVFTLNGGAIVWRSIKQGCIA     +  +      KE  WLRKFL DFEVVPNMNLPITLYCDNSGA     +       
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSHREIVQRGDVIVTQIASSTTL
        K    +    REIVQ+GDVIVT+IAS   +
Subjt:  KAHRAQIPSHREIVQRGDVIVTQIASSTTL
TYK23781.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]7.6e-3460.99Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYT+SDFQ D DS KSTSGS+FTLN  A+VWRSIKQGCIA     +  +      KE  WLRKFLTD EVVPNM+ PITLYCDNSG    ++ N     +
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSH----REIVQRGDVIVTQIASSTTLPIRLQSP
          HR  I       REIV RGDVIVTQIASST L IRLQSP
Subjt:  KAHRAQIPSH----REIVQRGDVIVTQIASSTTLPIRLQSP
TrEMBL top hitse value%identityAlignment
A0A5A7TKM4 Gag/pol protein3.7e-3465.08Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYTDSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIA     +  +      KE  WLRKFL D EVVPNMNLPITLYCDNSGA     +       
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSHREIVQRGDVIVTQIAS
        K    +    REIVQRGDVIVT+IAS
Subjt:  KAHRAQIPSHREIVQRGDVIVTQIAS
A0A5A7TZD0 Gag/pol protein3.7e-3465.08Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYTDSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIA     +  +      KE  WLRKFL D EVVPNMNLPITLYCDNSGA     +       
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSHREIVQRGDVIVTQIAS
        K    +    REIVQRGDVIVT+IAS
Subjt:  KAHRAQIPSHREIVQRGDVIVTQIAS
A0A5A7UYE8 Gag/pol protein3.7e-3465.08Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYTDSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIA     +  +      KE  WLRKFL D EVVPNMNLPITLYCDNSGA     +       
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSHREIVQRGDVIVTQIAS
        K    +    REIVQRGDVIVT+IAS
Subjt:  KAHRAQIPSHREIVQRGDVIVTQIAS
A0A5A7VJV4 Retrovirus-related pol polyprotein from transposon tnt 1-948.2e-3463.08Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYTDSDFQTD DSRKS SGSVFTLNGGAIVWRSIKQGCIA     +  +      KE  WLRKFL DFEVVPNMNLPITLYCDNSGA     +       
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSHREIVQRGDVIVTQIASSTTL
        K    +    REIVQ+GDVIVT+IAS   +
Subjt:  KAHRAQIPSHREIVQRGDVIVTQIASSTTL
A0A5D3DJD2 Retrovirus-related pol polyprotein from transposon tnt 1-943.7e-3460.99Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA
        GYT+SDFQ D DS KSTSGS+FTLN  A+VWRSIKQGCIA     +  +      KE  WLRKFLTD EVVPNM+ PITLYCDNSG    ++ N     +
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEAISA

Query:  KAHRAQIPSH----REIVQRGDVIVTQIASSTTLPIRLQSP
          HR  I       REIV RGDVIVTQIASST L IRLQSP
Subjt:  KAHRAQIPSH----REIVQRGDVIVTQIASSTTLPIRLQSP
SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1611.3e-0744.26Show/hide
Query:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWL
        GY+D+D+  DV+SR+STSG +F LNGG + WRS KQ  +A        + L+   +E  WL
Subjt:  GYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWL
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-1137.76Show/hide
Query:  SDPIPNERFGRGYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGA
        SDPI      +GYTD+D   D+D+RKS++G +FT +GGAI W+S  Q C+A     +  +     GKE+ WL++FL +  +         +YCD+  A
Subjt:  SDPIPNERFGRGYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGA
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.5e-0629.07Show/hide
Query:  YTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGA
        ++D+ FQ+  D+R+ST+G    L    I W+S KQ  ++     +    L+    E+ WL +F  + ++   ++ P  L+CDN+ A
Subjt:  YTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGCGACCCAATTCCAAATGAAAGATTTGGGAGAGGATACACTGACTCTGATTTTCAGACTGATGTGGATTCGAGGAAATCCACATCAGGATCAGTGTTCACTCT
TAACGGAGGAGCTATAGTATGGAGGAGTATAAAACAAGGTTGTATTGCGACTCCACAATGGAGGTCGAGTACGCTGCGACTTGCGAGAAAGGGGAAGGAGGTCAGATGGC
TTAGAAAGTTCTTGACTGATTTTGAAGTTGTTCCAAATATGAATTTGCCAATCACCCTTTATTGTGATAATAGTGGTGCAAAGTGGCAAATTCTAAAGAACCTAGAAGCC
ATAAGCGCGAAAGCACATAGAGCGCAAATACCATCTCATCGGGAGATTGTGCAACGAGGAGACGTGATTGTCACGCAGATCGCTTCGAGCACAACATTGCCGATCCGTTT
ACAAAGCCCTCACGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAGCGACCCAATTCCAAATGAAAGATTTGGGAGAGGATACACTGACTCTGATTTTCAGACTGATGTGGATTCGAGGAAATCCACATCAGGATCAGTGTTCACTCT
TAACGGAGGAGCTATAGTATGGAGGAGTATAAAACAAGGTTGTATTGCGACTCCACAATGGAGGTCGAGTACGCTGCGACTTGCGAGAAAGGGGAAGGAGGTCAGATGGC
TTAGAAAGTTCTTGACTGATTTTGAAGTTGTTCCAAATATGAATTTGCCAATCACCCTTTATTGTGATAATAGTGGTGCAAAGTGGCAAATTCTAAAGAACCTAGAAGCC
ATAAGCGCGAAAGCACATAGAGCGCAAATACCATCTCATCGGGAGATTGTGCAACGAGGAGACGTGATTGTCACGCAGATCGCTTCGAGCACAACATTGCCGATCCGTTT
ACAAAGCCCTCACGGCTAA
Protein sequenceShow/hide protein sequence
MASDPIPNERFGRGYTDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIATPQWRSSTLRLARKGKEVRWLRKFLTDFEVVPNMNLPITLYCDNSGAKWQILKNLEA
ISAKAHRAQIPSHREIVQRGDVIVTQIASSTTLPIRLQSPHG