CuGenDBv2

Gene ID	Tan0018779
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG09:7099640..7099861
RNA-Seq Expression	Tan0018779
Synteny	Tan0018779
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

6.0e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

6.0e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

6.0e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

6.0e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

6.0e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

2.9e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

A0A5A7TU93 Gag/pol protein

2.9e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

A0A5A7TWB9 Gag/pol protein

2.9e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

A0A5A7V4M1 Gag/pol protein

2.9e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

A0A5D3CPJ6 Gag/pol protein

2.9e-21

72.6

Show/hide

Query:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL
        MD +Q MFGQ S Q +H+ALKYI+N+RM+EG SVR+HVLNMMVHFN+ E NGA IDE+SQVSFILE+LP+SFL
Subjt:  MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTTAGTGCAGGGTATGTTTGGACAACAATCTACACAGGCCCGCCACAATGCCCTCAAGTATATATTCAACTCGAGGATGTCAGAGGGTACATCTGTTCGGGATCA
TGTCCTGAATATGATGGTACACTTTAACATCACTGAGTCGAATGGTGCTTCTATCGATGAATCGAGCCAAGTCAGCTTCATTCTGGAAACTCTTCCTGATAGTTTCCTCT
AG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDLVQGMFGQQSTQARHNALKYIFNSRMSEGTSVRDHVLNMMVHFNITESNGASIDESSQVSFILETLPDSFL

Tan0018779 (gene) of Snake gourd v1 genome