; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0018781 (gene) of Snake gourd v1 genome

Gene IDTan0018781
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L24
Genome locationLG07:74380121..74385178
RNA-Seq ExpressionTan0018781
SyntenyTan0018781
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146016.1 uncharacterized protein LOC111015327 [Momordica charantia]4.9e-8498.11Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        SKVRVSRGIGASGS+IPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

XP_022931187.1 uncharacterized protein LOC111437445 [Cucurbita moschata]2.9e-8498.11Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        SKVRVSRGIGASGS+IPRPEILKIRTTPRPTVAGPKDTPMDVVLEK+YDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

XP_028774016.1 uncharacterized protein LOC114731056 [Prosopis alba]1.0e-8193.71Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHWK+LRGDNVMIIRGKDKGETGVIKRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP+H SNVQVVDP TGKPCKVGIRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        +KVRVSRG+GASGS+IPRPEILKIRTTPRPTVAGPKDTPMD+VLEKTYDAKTG+GMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

XP_030497980.1 uncharacterized protein LOC115713450 [Cannabis sativa]1.3e-8191.82Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHW+ILRGDNVM+IRGKDKGETGV+KRV+R+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVGI+YLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        +KVRVSRG+GASGS+IPRPEILKIRTTPRPTVAGPKDTPMDVV+EKTYDAKTG+GMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

XP_038889029.1 50S ribosomal protein L24 [Benincasa hispida]5.4e-8397.48Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDP TGKPCKVGIRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        SKVRVSRGIGASGS+IPR EILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMP+L
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

TrEMBL top hitse value%identityAlignment
A0A061DRL4 KOW domain-containing protein1.1e-8193.08Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHWK+LRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG GHEGGIFTVEAPLH SNVQVVDP TGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        +KVRVSRGIGASGS+IPRPEILKIRTTPRPTVAGPKDTPMD+VLEKTYD+KTGKGMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

A0A6J1CYB5 uncharacterized protein LOC1110153272.4e-8498.11Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        SKVRVSRGIGASGS+IPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

A0A6J1EXQ8 uncharacterized protein LOC1114374451.4e-8498.11Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        SKVRVSRGIGASGS+IPRPEILKIRTTPRPTVAGPKDTPMDVVLEK+YDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

A0A6J1K0T3 uncharacterized protein LOC1114913631.4e-8498.11Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        SKVRVSRGIGASGS+IPRPEILKIRTTPRPTVAGPKDTPMDVVLEK+YDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

A0A7J6GLF8 KOW domain-containing protein1.1e-8191.82Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHW+ILRGDNVM+IRGKDKGETGV+KRV+R+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVGI+YLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        +KVRVSRG+GASGS+IPRPEILKIRTTPRPTVAGPKDTPMDVV+EKTYDAKTG+GMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

SwissProt top hitse value%identityAlignment
A8F2D6 50S ribosomal protein L241.5e-2252.58Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG
        K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++  G
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG

C3PP96 50S ribosomal protein L241.5e-2251.55Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG
        K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++  G
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG

Q4UMR8 50S ribosomal protein L248.5e-2352.58Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG
        K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++  G
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG

Q92GX7 50S ribosomal protein L241.5e-2251.55Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG
        K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++  G
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG

Q9ZCR6 50S ribosomal protein L241.1e-2251.55Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG
        K+ +GD V+II GK KG+ G + +V   +N V+V G NLVKKH K  +  EGGI T E+P+H+SN+  +DP TG P KV  ++LEDGSKVRV++  G
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG

Arabidopsis top hitse value%identityAlignment
AT5G23535.1 KOW domain-containing protein8.6e-7986.16Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG IKRVIR+QNRVIVEGKNL+KKHIK G  HEGGIFTVEAPLH SNVQVVDP TG+PCKVG++YLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDG

Query:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL
        +KVRV+RG G SGS+IPRPEILKIR TPRPT AGPKDTPM+ V E+TYDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL

AT5G54600.1 Translation protein SH3-like family protein1.8e-1234.58Show/hide
Query:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIGASGSVI
        GD V +I G+DKG+ G + ++    + ++++  NL  KH+K + +G  G I  +EAP+H SNV +         +VG + LEDG KVR     G     I
Subjt:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIGASGSVI

Query:  PRPEILK
         + ++LK
Subjt:  PRPEILK

AT5G54600.2 Translation protein SH3-like family protein8.8e-0732.08Show/hide
Query:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIGASGSVIP
        GD V +I G+DKG+ G + ++  T N  I                  G I  +EAP+H SNV +         +VG + LEDG KVR     G     I 
Subjt:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIGASGSVIP

Query:  RPEILK
        + ++LK
Subjt:  RPEILK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTAATTAAGCG
TGTCATTCGCACTCAAAATCGCGTTATTGTCGAGGGTAAAAACCTGGTTAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCCC
TCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGAAGCCTTGTAAGGTTGGTATTAGATATCTTGAAGATGGTTCTAAAGTACGAGTTTCAAGAGGAATTGGA
GCCTCAGGTTCTGTAATCCCTCGTCCAGAGATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGCTGGTCCCAAGGATACTCCAATGGATGTGGTGCTGGAGAAAAC
TTATGATGCTAAAACAGGGAAGGGCATGCCTGACCTTTAA
mRNA sequenceShow/hide mRNA sequence
TGCTAAATCAAAGACCGATCGGTTCGGTCGGTTCTCGATTGGGTCCAAATCAAGGAAACCGAACCGAGTATCACCACTTTACGAAAGAAGGCCTAGACAGAGCCCAGAGG
CTTTCCGGTCGTAACCTGAATACAATTAGGGAAGCAAACGACGACGGTGGTGCGATTGATTGAGCAAAGGTTTTGAGCGAGGAAGAAAGTGACGAGCCCAACACTGCATC
TGCCTAGCTGAAGTGTGGTGTAACTTGTGCAGATAGTGGAAACAATAGCTTTGGTACTTGCATTACTTTCAAATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTG
GAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTAATTAAGCGTGTCATTCGCACTCAAAATCGCGTTATTGTCGAGGGTA
AAAACCTGGTTAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCCCTCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACA
GGGAAGCCTTGTAAGGTTGGTATTAGATATCTTGAAGATGGTTCTAAAGTACGAGTTTCAAGAGGAATTGGAGCCTCAGGTTCTGTAATCCCTCGTCCAGAGATCTTAAA
GATAAGGACTACTCCCAGACCTACAGTTGCTGGTCCCAAGGATACTCCAATGGATGTGGTGCTGGAGAAAACTTATGATGCTAAAACAGGGAAGGGCATGCCTGACCTTT
AATGCTTCTATTCAATTCAGAAGACATGGTTCTACTAGGTTCGAAAATGATTTAGGACTTGAGGATGCATCTTTGTTGTAATGGGCGGCAACTTATATCTCATTTCCTTG
TCTTTTATTTACTATTTTCTTTAGATTAATATTCATGGGTGGTTTTGAAGTTGAAGGAACGGCTCTGATCTTTTGATGGTTATGATAAAAAAGGAAATAATTTTGAACTC
AAATTTTTGGTATTTAGTTTTATGAGTTGATACATTTGCTCTTTCCGAGCCTCTTCATAGAGGAAGACAATCCTGTTCCTTTTCTGTCCCTGCAGAGCAATGTGTAAAGA
ACTGCTTTCCAGAGGATGTAGAAGATCTATTTTTACTTAGAAATAAATCCTTTCATGCTTCTTCTTACAGAA
Protein sequenceShow/hide protein sequence
MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIG
ASGSVIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL