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Tan0018844 (gene) of Snake gourd v1 genome

Gene IDTan0018844
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTetratricopeptide-like helical
Genome locationLG01:13836678..13837019
RNA-Seq ExpressionTan0018844
SyntenyTan0018844
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]2.6e-2361.16Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARNYKFR----------------------GILYRLSRSIEKRA
        MSVSLEALAMAGIDSNEWGM+A+EWERNE+ D VPPHLLADE+   DD+DG  +TS+  NY FR                      GI Y LS+ IEKRA
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARNYKFR----------------------GILYRLSRSIEKRA

Query:  SNGVSSVRIMVRTIVGFLMVM
        SNG++SVRI+VRTI+GFLMVM
Subjt:  SNGVSSVRIMVRTIVGFLMVM

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2760Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNYKFR----------------------GILYRLSRSIEKRAS
        MSVSLEALAMAGI SNEW M+AEEWERNE+E+DVPPHLLADE    DDDD N+TS+  NY F                       GIL  LS+S+EKRAS
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNYKFR----------------------GILYRLSRSIEKRAS

Query:  NGVSSVRIMVRTIVGFLMVMVMKIISVQRS
        NG+SSVRI+VRTI+GFL+V ++KIIS   S
Subjt:  NGVSSVRIMVRTIVGFLMVMVMKIISVQRS

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-2760Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNYKFR----------------------GILYRLSRSIEKRAS
        MSVSLEALAMAGI SNEW M+AEEWERNE+E+DVPPHLLADE    DDDD N+TS+  NY F                       GIL  LS+S+EKRAS
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNYKFR----------------------GILYRLSRSIEKRAS

Query:  NGVSSVRIMVRTIVGFLMVMVMKIISVQRS
        NG+SSVRI+VRTI+GFL+V ++KIIS   S
Subjt:  NGVSSVRIMVRTIVGFLMVMVMKIISVQRS

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]1.0e-2762.88Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARNYKFR----------------------GILYRLSRSIEKRA
        MSVSLEALAMAGIDSNEWGM+A+EWERNE+ D VPPHLLADE+   DD+DG  +TS+  NY FR                      GI Y LS+ IEKRA
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARNYKFR----------------------GILYRLSRSIEKRA

Query:  SNGVSSVRIMVRTIVGFLMVMVMKIISVQRSK
        SNG++SVRI+VRTI+GFLMVM MKIIS QRSK
Subjt:  SNGVSSVRIMVRTIVGFLMVMVMKIISVQRSK

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.1e-1852.42Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDD---------------DDGNLTSSARNYKFRGILYRLSRSIEKRASNGVSSVR
        MSVSLEALAMAGIDSNEW M+AEEWERNEME D+PPHLLADED++ D+               DDG    S        I++ L +  EKR  N +SS+ 
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDD---------------DDGNLTSSARNYKFRGILYRLSRSIEKRASNGVSSVR

Query:  IMVRTIVGFLMVMVMKIISVQRSK
        I+   +VGFLM M +KII+ +RSK
Subjt:  IMVRTIVGFLMVMVMKIISVQRSK

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein2.6e-0850.54Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERN----EMEDDVPPHLLADEDEDG-----------DDDDGNLTSSARNYKFRGILYRLSRSIEKRAS
        M VSLEALAMAGIDSNEW M+AEEW+ N    E +D +PPHLLADEDE+              DDG +   A    FR     L + +EKRAS
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERN----EMEDDVPPHLLADEDEDG-----------DDDDGNLTSSARNYKFRGILYRLSRSIEKRAS

A0A0A0KWE7 Uncharacterized protein5.5e-2760.9Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNYKF------------------------RGILYRLSRSIEKR
        MSVSLEALAMAGIDSNEW M+AEEWERNE+ D VPPHLLADE++D D D+   TS+  NY F                         GI   LS+ IEKR
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNYKF------------------------RGILYRLSRSIEKR

Query:  ASNGVSSVRIMVRTIVGFLMVMVMKIISVQRSK
        ASNG+SSVRI+VRTI+GFLMVM MKIIS QRSK
Subjt:  ASNGVSSVRIMVRTIVGFLMVMVMKIISVQRSK

A0A5A7TS68 Tetratricopeptide-like helical1.3e-2361.16Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARNYKFR----------------------GILYRLSRSIEKRA
        MSVSLEALAMAGIDSNEWGM+A+EWERNE+ D VPPHLLADE+   DD+DG  +TS+  NY FR                      GI Y LS+ IEKRA
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARNYKFR----------------------GILYRLSRSIEKRA

Query:  SNGVSSVRIMVRTIVGFLMVM
        SNG++SVRI+VRTI+GFLMVM
Subjt:  SNGVSSVRIMVRTIVGFLMVM

A0A5D3CZU0 Tetratricopeptide-like helical5.0e-2862.88Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARNYKFR----------------------GILYRLSRSIEKRA
        MSVSLEALAMAGIDSNEWGM+A+EWERNE+ D VPPHLLADE+   DD+DG  +TS+  NY FR                      GI Y LS+ IEKRA
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARNYKFR----------------------GILYRLSRSIEKRA

Query:  SNGVSSVRIMVRTIVGFLMVMVMKIISVQRSK
        SNG++SVRI+VRTI+GFLMVM MKIIS QRSK
Subjt:  SNGVSSVRIMVRTIVGFLMVMVMKIISVQRSK

A0A6J1FX98 uncharacterized protein LOC1114478805.5e-1952.42Show/hide
Query:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDD---------------DDGNLTSSARNYKFRGILYRLSRSIEKRASNGVSSVR
        MSVSLEALAMAGIDSNEW M+AEEWERNEME D+PPHLLADED++ D+               DDG    S        I++ L +  EKR  N +SS+ 
Subjt:  MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDD---------------DDGNLTSSARNYKFRGILYRLSRSIEKRASNGVSSVR

Query:  IMVRTIVGFLMVMVMKIISVQRSK
        I+   +VGFLM M +KII+ +RSK
Subjt:  IMVRTIVGFLMVMVMKIISVQRSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein5.9e-0533.93Show/hide
Query:  LEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLAD---------EDEDGDDDDGNLTSSA-RNYKFRGILYRLSRSIEKRASNGV---SSVRIMVRTI
        +EALAMAG+D  EWG++ EEWE    E  VP HLLAD         + +D DDDD  L   A +    R I   + + IE+  S+ +     ++ +   +
Subjt:  LEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLAD---------EDEDGDDDDGNLTSSA-RNYKFRGILYRLSRSIEKRASNGV---SSVRIMVRTI

Query:  VGFLMVMVMKII
          FL   V+  +
Subjt:  VGFLMVMVMKII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATCGATTCCAATGAATGGGGTATGAATGCTGAAGAATGGGAAAGAAATGAAATGGAGGACGACGTTCCGCCGCA
TTTATTAGCTGACGAAGACGAAGATGGAGACGACGACGATGGAAACTTAACGAGTAGTGCTCGTAACTATAAGTTTAGGGGCATTTTGTACCGTCTAAGCAGAAGCATAG
AGAAGAGGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGAACAATTGTAGGGTTTCTGATGGTGATGGTCATGAAGATAATTAGTGTACAGAGATCCAAGTTC
AACAAATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATCGATTCCAATGAATGGGGTATGAATGCTGAAGAATGGGAAAGAAATGAAATGGAGGACGACGTTCCGCCGCA
TTTATTAGCTGACGAAGACGAAGATGGAGACGACGACGATGGAAACTTAACGAGTAGTGCTCGTAACTATAAGTTTAGGGGCATTTTGTACCGTCTAAGCAGAAGCATAG
AGAAGAGGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGAACAATTGTAGGGTTTCTGATGGTGATGGTCATGAAGATAATTAGTGTACAGAGATCCAAGTTC
AACAAATTGTGA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNYKFRGILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMVMVMKIISVQRSKF
NKL