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Tan0018870 (gene) of Snake gourd v1 genome

Gene IDTan0018870
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCST complex subunit CTC1
Genome locationLG02:87276966..87277593
RNA-Seq ExpressionTan0018870
SyntenyTan0018870
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063096.1 putative transmembrane protein [Cucumis melo var. makuwa]1.3e-4787.1Show/hide
Query:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVS-AGAASLPA
        MS PIEQQSP  PG+QQ Y GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAE+KCSSCIDGRI+PPPPRV+ S A A+SLPA
Subjt:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVS-AGAASLPA

Query:  ATMAVQTQQETKQEEPASQNPPAN
         TMAV TQQETKQEEPASQNP AN
Subjt:  ATMAVQTQQETKQEEPASQNPPAN

KAG6598392.1 hypothetical protein SDJN03_08170, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4686.99Show/hide
Query:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAA
        MSLPIEQQSPPA GM  PY GHP SGSVGPVIGVLVVIIVFAVVAVVVGRLCSG SIMGYGHFDLESWAE+KCSSCIDGRIS  PPRVNVS  AASLP  
Subjt:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAA

Query:  TMAVQTQQETKQEEPASQNPPAN
        TMAV+TQQETKQEEPASQNP A+
Subjt:  TMAVQTQQETKQEEPASQNPPAN

XP_022144319.1 uncharacterized protein LOC111014030 [Momordica charantia]1.5e-4887.9Show/hide
Query:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAG--AASLP
        MSLPIEQQSPPAPGMQQPY GH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMGYGHFDLESWAE+KCSSCIDGRISPPPPR NVSA   A +LP
Subjt:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAG--AASLP

Query:  AATMAVQTQQETKQEEPASQNPPA
         ATMAVQTQQETKQEEPASQNP A
Subjt:  AATMAVQTQQETKQEEPASQNPPA

XP_031737057.1 uncharacterized protein LOC116402140 [Cucumis sativus]3.4e-4887.2Show/hide
Query:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVS--AGAASLP
        MSLPIEQQSP  PGMQQ Y GHPGSGSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAE+KCSSCIDGRI+PPPPRV+ S  A A+SLP
Subjt:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVS--AGAASLP

Query:  AATMAVQTQQETKQEEPASQNPPAN
        A TMAV TQQETKQEEPASQNP AN
Subjt:  AATMAVQTQQETKQEEPASQNPPAN

XP_038885752.1 uncharacterized protein LOC120076044 [Benincasa hispida]4.0e-4988Show/hide
Query:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAA
        MSLPIEQQSPPA  MQQ Y GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAE+KCSSCIDGRISPPPPRV+  A AASLPA 
Subjt:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAA

Query:  TMAVQTQQETK--QEEPASQNPPAN
        TMA + QQETK  QEEPASQNPPAN
Subjt:  TMAVQTQQETK--QEEPASQNPPAN

TrEMBL top hitse value%identityAlignment
A0A0A0LP67 Uncharacterized protein1.6e-4887.2Show/hide
Query:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVS--AGAASLP
        MSLPIEQQSP  PGMQQ Y GHPGSGSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAE+KCSSCIDGRI+PPPPRV+ S  A A+SLP
Subjt:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVS--AGAASLP

Query:  AATMAVQTQQETKQEEPASQNPPAN
        A TMAV TQQETKQEEPASQNP AN
Subjt:  AATMAVQTQQETKQEEPASQNPPAN

A0A5A7V9H6 Putative transmembrane protein6.2e-4887.1Show/hide
Query:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVS-AGAASLPA
        MS PIEQQSP  PG+QQ Y GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAE+KCSSCIDGRI+PPPPRV+ S A A+SLPA
Subjt:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVS-AGAASLPA

Query:  ATMAVQTQQETKQEEPASQNPPAN
         TMAV TQQETKQEEPASQNP AN
Subjt:  ATMAVQTQQETKQEEPASQNPPAN

A0A6J1CRZ5 uncharacterized protein LOC1110140307.3e-4987.9Show/hide
Query:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAG--AASLP
        MSLPIEQQSPPAPGMQQPY GH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMGYGHFDLESWAE+KCSSCIDGRISPPPPR NVSA   A +LP
Subjt:  MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAG--AASLP

Query:  AATMAVQTQQETKQEEPASQNPPA
         ATMAVQTQQETKQEEPASQNP A
Subjt:  AATMAVQTQQETKQEEPASQNPPA

A0A6J1KK79 uncharacterized protein LOC1114960283.4e-4685.48Show/hide
Query:  MSLPIEQQSPPAPGMQQPYSGHPGS-GSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPA
        MSLPI+QQSPPAPGMQQPY GH  S GSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLE WAE KCSSCIDGRIS P PRVNVS  AASLPA
Subjt:  MSLPIEQQSPPAPGMQQPYSGHPGS-GSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPA

Query:  ATMAVQTQQETKQEEPASQNPPAN
        ATM+VQTQ    Q+EPASQNPP N
Subjt:  ATMAVQTQQETKQEEPASQNPPAN

A0A6P4ABB2 uncharacterized protein LOC1074209054.9e-2961.6Show/hide
Query:  MSLPI-EQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPA
        M++P+ EQ  PPA  +QQP+S H   GS+GP+I VLVVIIV  ++AV+VGRLCSG+S+MGYG FDLESWAE KCSSCIDG+I+ P PR N+S+   S+P 
Subjt:  MSLPI-EQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPA

Query:  ATMAVQTQQETKQEEPASQNPPANV
         TM V+T QE  QEE +S NP ANV
Subjt:  ATMAVQTQQETKQEEPASQNPPANV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G26520.1 unknown protein4.3e-1739.13Show/hide
Query:  SLPIEQQSPPAPGMQQPYS--GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISP--------PPPRVNVS
        S+P+  Q PPA  + Q  S     G+ ++GP I V +V+ V  V+A V+GRLCSG++I+GYG +D+E WAES+C SCIDG I P        PPPR  + 
Subjt:  SLPIEQQSPPAPGMQQPYS--GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISP--------PPPRVNVS

Query:  AGAASLPA------ATMAVQT---QQETKQEEPASQNP
          ++ + A      A +  +T   +Q++   EP  Q P
Subjt:  AGAASLPA------ATMAVQT---QQETKQEEPASQNP

AT3G57500.1 unknown protein5.6e-0941.05Show/hide
Query:  PGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRI-------SPPPPRVNVSAGAASLPAA
        P   QP S +    S+  ++ VL VI + +V+A V  RLC GR +   G  D+E W E KC SCID  I       SPPPP    +A   S PAA
Subjt:  PGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRI-------SPPPPRVNVSAGAASLPAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTCCCAATTGAACAACAATCTCCGCCGGCGCCGGGAATGCAGCAACCTTACAGTGGTCATCCGGGCAGCGGCTCCGTTGGTCCGGTCATCGGAGTGCTCGTCGT
CATCATTGTGTTCGCTGTGGTCGCCGTCGTGGTGGGGCGGCTGTGCTCGGGGAGGAGCATTATGGGTTACGGCCATTTCGACTTGGAGAGCTGGGCGGAGAGCAAATGTT
CGTCTTGCATCGACGGAAGGATCAGCCCGCCGCCGCCGAGGGTCAATGTCTCCGCCGGCGCCGCATCTCTTCCGGCAGCGACAATGGCGGTCCAAACCCAGCAAGAAACT
AAGCAAGAAGAACCAGCTTCTCAAAATCCACCTGCCAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
GTTCTTCTAGTTTCCATCAATTTACAGTAAAAGAAAACATCTTTTTCTCCGTTGGTCACTCTTTGCAATAACTTTGCTCTTCTCTTCTTTTTTCTTCACTCCATTTTTTT
CAGAGCTTTAGAAATCTCCTCGCCATTACAGAGTGACTCTGTTTTCTTCACGTTTGGATTTGTTGTAAAGGAAACAAAAGAAAGAAAACGCTGTGGCCGTCCCCGTTGCC
GGAGCATTACATTACAGCTCTTGCTCCGGCCAAATGTCACTCCCAATTGAACAACAATCTCCGCCGGCGCCGGGAATGCAGCAACCTTACAGTGGTCATCCGGGCAGCGG
CTCCGTTGGTCCGGTCATCGGAGTGCTCGTCGTCATCATTGTGTTCGCTGTGGTCGCCGTCGTGGTGGGGCGGCTGTGCTCGGGGAGGAGCATTATGGGTTACGGCCATT
TCGACTTGGAGAGCTGGGCGGAGAGCAAATGTTCGTCTTGCATCGACGGAAGGATCAGCCCGCCGCCGCCGAGGGTCAATGTCTCCGCCGGCGCCGCATCTCTTCCGGCA
GCGACAATGGCGGTCCAAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCTCAAAATCCACCTGCCAACGTTTGA
Protein sequenceShow/hide protein sequence
MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAATMAVQTQQET
KQEEPASQNPPANV