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Tan0018908 (gene) of Snake gourd v1 genome

Gene IDTan0018908
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 23-like
Genome locationLG09:57123270..57123461
RNA-Seq ExpressionTan0018908
SyntenyTan0018908
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-1480.95Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A   N
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
XP_022933008.1 arabinogalactan peptide 23-like [Cucurbita moschata]4.0e-1377.78Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS  LPALGSLVGASLVS +A   N
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
XP_022960230.1 arabinogalactan peptide 23-like [Cucurbita moschata]3.6e-1480.95Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A   N
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]2.8e-1480.95Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A   N
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
XP_023528634.1 arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]6.2e-1477.78Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMK +AC ALF A  + AVVASDESLSPAAAPGPSS AS ALPALGSL+GASLVSF+A +LN
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
TrEMBL top hitse value%identityAlignment
A0A1S3CDX5 arabinogalactan peptide 23-like1.1e-0866.67Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS
        MEMKK+AC ALF A  + A VA+DES+SPAAAPGPSS AS ALP L    GAS+VSF+A+
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS
A0A6J1F3F5 arabinogalactan peptide 23-like1.9e-1377.78Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS  LPALGSLVGASLVS +A   N
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
A0A6J1H8I1 arabinogalactan peptide 23-like1.7e-1480.95Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A   N
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
A0A6J1IYE9 arabinogalactan peptide 23-like1.9e-1376.19Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMK +AC ALF A  + AVVASDES SPAAAPGPSS AS ALPALGSL+GASLVSF+A +LN
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
A0A6J1KX42 arabinogalactan peptide 23-like1.3e-1480.95Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A   N
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 231.8e-0860.32Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC  LF A ++ AV+A++E  +P  APGP+S AS ALPALGSLVGASLVS  +  L+
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)9.2e-0859.38Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGP-SSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC  +F A ++ AV+A++     A APGP +S ASVA+PALGSLVGASLVS  A  LN
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGP-SSTASVALPALGSLVGASLVSFIASILN
AT3G20865.1 arabinogalactan protein 403.6e-0443.55Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASIL
        MEMK +  +ALF++  + + V++    SPA +PG SS ++VA P +GS+V ASL +F+A +L
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASIL
AT3G57690.1 arabinogalactan protein 231.3e-0960.32Show/hide
Query:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
        MEMKK+AC  LF A ++ AV+A++E  +P  APGP+S AS ALPALGSLVGASLVS  +  L+
Subjt:  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGGTTGCCTGCATCGCCCTCTTCGTCGCCACTACCATCGGTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCTGCTGCTGCACCCGGGCCGAGTAG
CACTGCCTCCGTCGCTCTTCCCGCCCTTGGATCGCTTGTTGGTGCCTCGCTTGTTTCCTTCATCGCCTCCATCCTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGGTTGCCTGCATCGCCCTCTTCGTCGCCACTACCATCGGTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCTGCTGCTGCACCCGGGCCGAGTAG
CACTGCCTCCGTCGCTCTTCCCGCCCTTGGATCGCTTGTTGGTGCCTCGCTTGTTTCCTTCATCGCCTCCATCCTGAATTGA
Protein sequenceShow/hide protein sequence
MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN