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Tan0018943 (gene) of Snake gourd v1 genome

Gene IDTan0018943
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG08:20863823..20864507
RNA-Seq ExpressionTan0018943
SyntenyTan0018943
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]6.1e-3362.71Show/hide
Query:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVKFH-------DL
        +QLV++G W  DNGTF+PGYL+QVQKLMKEK+L S+IQV+PNLES V+ILKKQY  I EMMGP CSGF WN ERKCIEAEKS+ +DWVK H       + 
Subjt:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVKFH-------DL

Query:  PIPDPPVSDTVFGEDIST
        P P     + VFG D +T
Subjt:  PIPDPPVSDTVFGEDIST

KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.7e-3375.28Show/hide
Query:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVK
        +QLV++GGW  DNGTF+ GYL+QVQKLMKEK+  S+IQV+PNLESRV+ILKKQY VI +MMGP C+ FGWN+ERKCIEAEKS+FDDWVK
Subjt:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVK

KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-4156.69Show/hide
Query:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVK-----------
        +QLV++GGW  DNGTF+ GYL+QVQKLMKEK+LGS+IQV+PNL+SRV+ILKKQY  I EMMGP CSGFGWN+ERKCIEAEKS+FDDWVK           
Subjt:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVK-----------

Query:  --FHDLPIPDPPVSDTVFGEDISTKPNSRNDGPVESTVSKKRCMVHGELTEVFRTEM
            D  IP+P   +   GED+ + P S       S  SKKR    G+L + FR  M
Subjt:  --FHDLPIPDPPVSDTVFGEDISTKPNSRNDGPVESTVSKKRCMVHGELTEVFRTEM

TYK02222.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.0e-3252.35Show/hide
Query:  VQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDW-----------VKFHD
        V++GGW  DNGTF  GYL+QVQKLMKEK+  S+IQV+ NLESRV ILKKQY VI EMMG  C+GFG N++RKCIEAEK +FDDW           +   D
Subjt:  VQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDW-----------VKFHD

Query:  LPIPDPPVSDTVFGEDISTKPNSRNDGPVESTVSKKRCMVHGELTEVFR
          IP+P   +   GED+ + P S       S  SKKR    G+L + FR
Subjt:  LPIPDPPVSDTVFGEDISTKPNSRNDGPVESTVSKKRCMVHGELTEVFR

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]6.1e-3362.71Show/hide
Query:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVKFH-------DL
        +QLV++G W  DNGTF+PGYL+QVQKLMKEK+L S+IQV+PNLES V+ILKKQY  I EMMGP CSGF WN ERKCIEAEKS+ +DWVK H       + 
Subjt:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVKFH-------DL

Query:  PIPDPPVSDTVFGEDIST
        P P     + VFG D +T
Subjt:  PIPDPPVSDTVFGEDIST

TrEMBL top hitse value%identityAlignment
A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein2.9e-3362.71Show/hide
Query:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVKFH-------DL
        +QLV++G W  DNGTF+PGYL+QVQKLMKEK+L S+IQV+PNLES V+ILKKQY  I EMMGP CSGF WN ERKCIEAEKS+ +DWVK H       + 
Subjt:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVKFH-------DL

Query:  PIPDPPVSDTVFGEDIST
        P P     + VFG D +T
Subjt:  PIPDPPVSDTVFGEDIST

A0A5A7TF70 Putative nuclease HARBI11.3e-3375.28Show/hide
Query:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVK
        +QLV++GGW  DNGTF+ GYL+QVQKLMKEK+  S+IQV+PNLESRV+ILKKQY VI +MMGP C+ FGWN+ERKCIEAEKS+FDDWVK
Subjt:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVK

A0A5A7U7F7 Retrotransposon protein7.7e-4256.69Show/hide
Query:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVK-----------
        +QLV++GGW  DNGTF+ GYL+QVQKLMKEK+LGS+IQV+PNL+SRV+ILKKQY  I EMMGP CSGFGWN+ERKCIEAEKS+FDDWVK           
Subjt:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVK-----------

Query:  --FHDLPIPDPPVSDTVFGEDISTKPNSRNDGPVESTVSKKRCMVHGELTEVFRTEM
            D  IP+P   +   GED+ + P S       S  SKKR    G+L + FR  M
Subjt:  --FHDLPIPDPPVSDTVFGEDISTKPNSRNDGPVESTVSKKRCMVHGELTEVFRTEM

A0A5A7UXQ6 Putative nuclease HARBI15.0e-3352.35Show/hide
Query:  VQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDW-----------VKFHD
        V++GGW  DNGTF  GYL+QVQKLMKEK+  S+IQV+ NLESRV ILKKQY VI EMMG  C+GFG N++RKCIEAEK +FDDW           +   D
Subjt:  VQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDW-----------VKFHD

Query:  LPIPDPPVSDTVFGEDISTKPNSRNDGPVESTVSKKRCMVHGELTEVFR
          IP+P   +   GED+ + P S       S  SKKR    G+L + FR
Subjt:  LPIPDPPVSDTVFGEDISTKPNSRNDGPVESTVSKKRCMVHGELTEVFR

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein2.9e-3362.71Show/hide
Query:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVKFH-------DL
        +QLV++G W  DNGTF+PGYL+QVQKLMKEK+L S+IQV+PNLES V+ILKKQY  I EMMGP CSGF WN ERKCIEAEKS+ +DWVK H       + 
Subjt:  MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVKFH-------DL

Query:  PIPDPPVSDTVFGEDIST
        P P     + VFG D +T
Subjt:  PIPDPPVSDTVFGEDIST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACTTGTTCAACAAGGTGGGTGGAATGGTGATAATGGGACTTTTAGGCCTGGATATCTACTTCAAGTACAAAAATTAATGAAGGAAAAGCTACTAGGAAGCGACAT
ACAAGTGTCACCAAACTTAGAATCAAGAGTAAGGATTCTGAAGAAGCAATATGGAGTTATAGTTGAAATGATGGGCCCGACATGCAGTGGTTTCGGATGGAATGACGAGC
GAAAGTGTATTGAAGCAGAGAAATCGATTTTTGATGATTGGGTTAAGTTCCATGATCTCCCTATACCTGACCCACCTGTATCTGACACTGTGTTTGGAGAGGACATATCT
ACCAAACCTAACTCGAGGAATGATGGGCCAGTAGAATCCACAGTGAGTAAGAAAAGGTGCATGGTGCATGGGGAACTCACTGAGGTTTTTCGCACAGAGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAACTTGTTCAACAAGGTGGGTGGAATGGTGATAATGGGACTTTTAGGCCTGGATATCTACTTCAAGTACAAAAATTAATGAAGGAAAAGCTACTAGGAAGCGACAT
ACAAGTGTCACCAAACTTAGAATCAAGAGTAAGGATTCTGAAGAAGCAATATGGAGTTATAGTTGAAATGATGGGCCCGACATGCAGTGGTTTCGGATGGAATGACGAGC
GAAAGTGTATTGAAGCAGAGAAATCGATTTTTGATGATTGGGTTAAGTTCCATGATCTCCCTATACCTGACCCACCTGTATCTGACACTGTGTTTGGAGAGGACATATCT
ACCAAACCTAACTCGAGGAATGATGGGCCAGTAGAATCCACAGTGAGTAAGAAAAGGTGCATGGTGCATGGGGAACTCACTGAGGTTTTTCGCACAGAGATGTGA
Protein sequenceShow/hide protein sequence
MQLVQQGGWNGDNGTFRPGYLLQVQKLMKEKLLGSDIQVSPNLESRVRILKKQYGVIVEMMGPTCSGFGWNDERKCIEAEKSIFDDWVKFHDLPIPDPPVSDTVFGEDIS
TKPNSRNDGPVESTVSKKRCMVHGELTEVFRTEM