; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0018993 (gene) of Snake gourd v1 genome

Gene IDTan0018993
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationLG10:63462275..63468248
RNA-Seq ExpressionTan0018993
SyntenyTan0018993
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin
IPR028119 - Snapin/Pallidin/Snn1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038897517.1 uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]4.6e-5388.72Show/hide
Query:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS
        YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS
Subjt:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS

Query:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLP
        +VRKRVLSLNSILR+IQRRVDNIDRAISMGNLP
Subjt:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLP

XP_038897518.1 uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida]4.6e-5388.72Show/hide
Query:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS
        YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS
Subjt:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS

Query:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLP
        +VRKRVLSLNSILR+IQRRVDNIDRAISMGNLP
Subjt:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLP

XP_038897519.1 uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]1.2e-5388.81Show/hide
Query:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS
        YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS
Subjt:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS

Query:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLPV
        +VRKRVLSLNSILR+IQRRVDNIDRAISMGNLPV
Subjt:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLPV

XP_038897521.1 uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]4.6e-5388.72Show/hide
Query:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS
        YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS
Subjt:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS

Query:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLP
        +VRKRVLSLNSILR+IQRRVDNIDRAISMGNLP
Subjt:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLP

XP_038897522.1 uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]4.6e-5388.72Show/hide
Query:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS
        YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS
Subjt:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS

Query:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLP
        +VRKRVLSLNSILR+IQRRVDNIDRAISMGNLP
Subjt:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLP

TrEMBL top hitse value%identityAlignment
A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 71.4e-5286.03Show/hide
Query:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS
        YS +EDSNVS ELETSI+P GDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS
Subjt:  YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS

Query:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLPVSR
        +VRKRVLSLNSILR+IQRRVDNIDRAI+MGNLP +R
Subjt:  SVRKRVLSLNSILRSIQRRVDNIDRAISMGNLPVSR

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 74.3e-4986.15Show/hide
Query:  DEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVR
        +EDS+VSVELETSI+ NGDL+E N++A+ NL NSNA+ANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDR+T+ELDQLLE APFPFIMQHASRISSVR
Subjt:  DEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVR

Query:  KRVLSLNSILRSIQRRVDNIDRAISMGNLP
        KRVLSLNSIL SIQRR+DNIDRAISMGN P
Subjt:  KRVLSLNSILRSIQRRVDNIDRAISMGNLP

A0A6J1FHK0 Biogenesis of lysosome-related organelles complex 1 subunit 72.5e-4983.33Show/hide
Query:  SPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISS
        S ++DS VS ELE SI+PNGD++E N+IA++NLG+SNA+ANGLSSML+NI+RDFDSKADDTLKSQSQLS SLDRLTSELDQLLEDAPFPFIMQHA RISS
Subjt:  SPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISS

Query:  VRKRVLSLNSILRSIQRRVDNIDRAISMGNLP
        VRKRVLSLNSILRS+QRRVDNIDR ISM NLP
Subjt:  VRKRVLSLNSILRSIQRRVDNIDRAISMGNLP

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 72.5e-4983.33Show/hide
Query:  SPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISS
        S ++DS VS ELE SI+PNGD++E N+IA++NLG+SNA+ANGLSSML+NI+RDFDSKADDTLKSQSQLS SLDRLTSELDQLLEDAPFPFIMQHA RISS
Subjt:  SPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISS

Query:  VRKRVLSLNSILRSIQRRVDNIDRAISMGNLP
        VRKRVLSLNSILRS+QRRVDNIDR ISM NLP
Subjt:  VRKRVLSLNSILRSIQRRVDNIDRAISMGNLP

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 71.1e-4986.15Show/hide
Query:  DEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVR
        +EDS+ SVELETSI+ NG+L+E N++A+ NL NSNA+ANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDR+T+ELDQLLEDAPFPFIMQHASRISSVR
Subjt:  DEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVR

Query:  KRVLSLNSILRSIQRRVDNIDRAISMGNLP
        KRVLSLNSILRSIQRR+DNIDRAISMGN P
Subjt:  KRVLSLNSILRSIQRRVDNIDRAISMGNLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related7.1e-2867.02Show/hide
Query:  GNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRVDNIDRAIS
        G   A+A GLS+ML ++I+DFDSKA DTL SQ +LS SLDRL  ELDQLLE+AP PFI+QHASRISSV++RV SLN +L+S+QRR+DNID  +S
Subjt:  GNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRVDNIDRAIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGTCCGGACGAGGACAGCAATGTCTCTGTTGAATTGGAGACTTCTATTAATCCAAATGGTGATCTTCAGGAAGGAAATAATATTGCAGATGTGAATTTGGGAAA
CTCTAATGCTATAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCC
TTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCTAGTGTAAGAAAGAGAGTTTTGTCTCTA
AATTCCATCTTAAGGTCCATACAACGAAGAGTGGATAATATAGATCGGGCAATCTCAATGGGTAATCTACCAGTTTCCAGGCATTTAAATATCTATGTAGGTTCTTCTTT
TTTAAGATCTAAAGACGGGAGAATGAAAGAAGAAAAGGGAGTAGCACCATAA
mRNA sequenceShow/hide mRNA sequence
CAAAAGATGGAGAAAACTTTCATTTTCTCTCGTCTCTCCCACAACTTCTTCTTCTTCCTTTTCCCTATCGATTGAACCCTCGTTGCGTAGCCCTTGTCATTGACCCATCA
CCACGTTGTTGCACTCCATGTTGAATCTCATCGTGCAACAATCTGATTCGCCAGCCTCGTTGCCAAACGTCATGTCCAGGTCGTGTTGCCGCTTCGCTTGCTGCACGCCC
ACGTCGTTGGTCGTGTGCCGCCACAGCTACGCGTGAACATCGATTGCCAGCCTCATGCAACATCGACTTGTTGTTATTTTTGTTGAAAAATCCAATCGAATATATCCCGA
ACACTTATACTGCATGTTGAATCGATGATTTTCGAGCGAAATAACCTTTCCGGCTACGGTTGGGCCAGAAGCTCTTCTCTCTGATCTCCATCTCCGAGGATTCCGCCGGC
GACGACGAACCAGTTCGCGAATTCTTCTGGATTCGTAGCACGAAGTTTGGTGACACCGTGAACTACGTTAAGTGGCAATTTCCCCTTTCTTACTTTCGATGTGATCTCTC
TGGAATTCGATTCTAAATACATGCTCGTATTACTCCATTTCTGTTTTGTTTGAGCATTAATGGAGGTTAATCTCGGGGAAACTTTTGCATATTACGGGGTTCCAGCCCCA
ATTTTGGTTTTTTATTACCCAGTGATCTTGGTTCAAGAATTCCAGAAAACGAATATTCCGTTAGTTATGCATTGTGCATCTCGTTGCAATCGTCTAGTCGCATTCGGCGT
TGACATAGGATAATCCCATTTCGTTGGTTCGTAGATCACTTTTTTCAAAATTACAGCAGATATAATTGTTAGTTTCTGGCCACTGACTATATTCTGTTCTGGTCTTCAAG
ATTTCGTGATTGAATCTGCATGTTAGTTTCATTACAATTGTGGTAGCTGCGATCTTGACTCCATGGATTTTTTCTCGAACAGCTGAGCAGTGAGGTTTATTCTCAGTTAT
TTTTTGTTTTGATTTCTCTCTTGTAGATGGCAGACTCATAAGATGCTCGAATTGTGGAAACTATTTTCATTTTTAGACTTTTTTGCCTCACATTATGAATATTGTAATTG
TTTCTACATTATGCTGGTAGCTAACGAACTAATACGAGTCCGGAGAAAGATGGGCGATTATCATTGTGAATGATGAACTTTGTGATCTCTTTCAGAAATTGCAAGAGATG
TATAGTCCGGACGAGGACAGCAATGTCTCTGTTGAATTGGAGACTTCTATTAATCCAAATGGTGATCTTCAGGAAGGAAATAATATTGCAGATGTGAATTTGGGAAACTC
TAATGCTATAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTTG
ACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCTAGTGTAAGAAAGAGAGTTTTGTCTCTAAAT
TCCATCTTAAGGTCCATACAACGAAGAGTGGATAATATAGATCGGGCAATCTCAATGGGTAATCTACCAGTTTCCAGGCATTTAAATATCTATGTAGGTTCTTCTTTTTT
AAGATCTAAAGACGGGAGAATGAAAGAAGAAAAGGGAGTAGCACCATAACAGATGGAAGTTGACTGGTGGTGGTAGGGTTTGGAAATGAGGGGAAAAGGTTGATTTTGGC
ATTAAGAAGTCGAGGAAAGTCCGAATTTTCATTTTAAAACGCAATGCATGAAGAATTAAGTAAACTTTTGGAGTGGCTCCAAATAGAAGCATATGTATACTCTTATATTG
TCACTAGGTACTAAGATCCAAGTGGACTATTTAAGAAATAGACTCTACTAGAATCAACTTGTGTGCCCTTCGAACTAATCTCACATTTCTACATTTGGTTGCCAAAAAAA
GTCGTAGGATGTTAAATCCTAGCTTACCGGTGACCGCCGTGATTTGAACTCAAAGATGTTTATTCTCTTTTCCTTTCCTTTACCCCTTCCCTTCCCTTCTCATTATGTAG
CCTGCATCAATTAGTGATATGAATTATGGTCTTCATAGACAAAGAAAATACATGCTCAGTTTTCAATCACACTGATTACCATCAGATTGCTGTCTTATAGATTAATTGCT
TATTTCTGATTAACAGTCTACAACCAGGGGGGGCAGGCATTCATTTTGTGGTTCATTTGGCTGATTGTATATGCATATTTATTATACATTGGAATAAAAATTAAGTAGCG
TGAGTATAAGATAACCCCATGCTATTTATTTCATTGTCTCTTTGACACTAAAATGTACCAGTTATCTACAGATACTCGTTCCTCTCAAAGTTCCTCACAACCTCAGAATG
GATGAAGATTGTACGTATCTGCAGTTCCTTTTCATTCTTCATTTTATGTATCCGAAGTTTTGGCAATTGTGTGTATCCTTTTACTGCCCCCTCCATTTTTACTACTAGGC
TTGAAAATACTGGAATAGAAAGACTGTTTCTGAATCAACAATTTTGAATCTTACAATACAACCTGCATAATTTATCGATC
Protein sequenceShow/hide protein sequence
MYSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSL
NSILRSIQRRVDNIDRAISMGNLPVSRHLNIYVGSSFLRSKDGRMKEEKGVAP