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Tan0019032 (gene) of Snake gourd v1 genome

Gene IDTan0019032
OrganismTrichosanthes anguina (Snake gourd v1)
Description40S ribosomal protein S21
Genome locationLG10:8849142..8851818
RNA-Seq ExpressionTan0019032
SyntenyTan0019032
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]2.1e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]4.7e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]6.1e-3896.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]9.4e-3998.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]2.1e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

TrEMBL top hitse value%identityAlignment
A0A0A0L7W3 40S ribosomal protein S211.0e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

A0A1S4DSM1 40S ribosomal protein S211.0e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

A0A5D3CXC9 40S ribosomal protein S211.0e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

A0A6J1GFE6 40S ribosomal protein S214.5e-3998.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

A0A6J1IJN4 40S ribosomal protein S211.0e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S211.1e-3480.49Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+K EV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

Q3E902 40S ribosomal protein S21-24.1e-3786.42Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ

Q41852 40S ribosomal protein S211.2e-3379.01Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKK E+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ

Q9M337 40S ribosomal protein S21-14.5e-3681.71Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

Q9SMI2 40S ribosomal protein S212.8e-2568Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e3.2e-3781.71Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

AT3G53890.2 Ribosomal protein S21e3.2e-3781.71Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

AT5G27700.1 Ribosomal protein S21e2.9e-3886.42Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGAAGAGGGAAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCCACAAATCGGCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGG
GCATTTGGATGAGAATGGCATCTACACCGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGGGAGATGCTGACAGTGCACTGGATCGGCTCTGGCAGA
AGAAGAAAGTTGAAGTTCATCAACAATAG
mRNA sequenceShow/hide mRNA sequence
AAAAAGAAAAAACCCTAGGGTTTCTGTTTTTAAGTTTCAGGGTTCCTGCACCACGCCTCTCTCTTCCTCTCGGATAGGTCGTTCTCTGGTTTTCTTATTCTAAAGAATTA
GTTGATACACTTATCAAAGATGCAGAACGAAGAGGGAAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCCACAAATCGGCTGATTACTTCCAAGGACCATGCTT
CTGTTCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACCGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGGGAGATGCTGACAGTGCA
CTGGATCGGCTCTGGCAGAAGAAGAAAGTTGAAGTTCATCAACAATAGATGATTGTGCTGTTCTGGTTCATCTCTATATAAAAGTTTTCAAGGATAGAGATACAGTTTTA
AAATTTTTGAACCTATCGTATTTAAGTAGTATCTTCTGAAAATTTAAACTCATTCTTTAAATGCAAACTCAACTACACCTGAGCCAGCACAAGCTTTGATGGGTCAAAAG
AGAGGGACAAAACTAAGGTGAATGAAATATGTTGAATTTCATTTTCCATTGAAATTTTTTTACCAGTGAGGTTTTATATGGCCATATGTGATGCTGATATGATATGGATG
CCTTTAAGCTTTTGGTAGGTTGTCCTTGGCAATGTGGTTTATAATGGAAAAACATGAACTAGTTGCACATTTCACATTAGGATGAGAATATTTTTACATGGTGCCATTAT
TTGCTAGCTCACTTGTTTTTCTTGTGTCTGTTGAGGTTAATGGCCTTGAATTTCTCTGTATAATCAATCATAGGAAAGCAAGTTAGCCAACAAGAGCGTAGCTTAATTAG
GCATCAAGTAACACTTGTGACCAAGAGGTCATGAGTTCGAATCTCCCACCCCAATTGTTGATGTACTAAAAAAAACATAGGAAAAAAAGTCCAAGAAAGAAAGAGATGGT
TGCATCTATGGGTTCTTATTGGCTCTAGTTACTAAGAATGTCATATGGTTGTTATTTTGTTATGCGAAGAATCAAATGCAGGGAATTGTTAGTCGAACTTGTCTACTGTT
CACACGAATAAATTATTGGGAAAACTTGTAATGTTAAGTAACTTGATATCTAGATTTTATTATTATTTTTATTTTTATTTGTTA
Protein sequenceShow/hide protein sequence
MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ