; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0019047 (gene) of Snake gourd v1 genome

Gene IDTan0019047
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSerine/arginine-rich splicing factor SR45a-like
Genome locationLG08:74493272..74495237
RNA-Seq ExpressionTan0019047
SyntenyTan0019047
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583387.1 Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia]3.1e-5673.33Show/hide
Query:  PETSLA-SRLYIRLLAFVRKAQFDACICELESEQRRSFGYSFDLGFASADFGAYSWDANGVFSMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDV
        PETS   + +YI LL F      DA   ELES+   +F Y     FA+          + + +MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DV
Subjt:  PETSLA-SRLYIRLLAFVRKAQFDACICELESEQRRSFGYSFDLGFASADFGAYSWDANGVFSMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDV

Query:  ENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK
        ENPGNNLYVTGLS R+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK
Subjt:  ENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK

XP_022964743.1 serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata]3.5e-5597.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

XP_022964744.1 serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata]3.5e-5597.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

XP_022970546.1 serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita maxima]4.1e-5696.64Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEKFF
        KYLNRSVLEGRIITVEKFF
Subjt:  KYLNRSVLEGRIITVEKFF

XP_023522126.1 serine/arginine-rich splicing factor SR45a-like [Cucurbita pepo subsp. pepo]3.5e-5597.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

TrEMBL top hitse value%identityAlignment
A0A6J1HLT5 serine/arginine-rich splicing factor SR45a-like isoform X11.7e-5597.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A6J1HP51 serine/arginine-rich splicing factor SR45a-like isoform X21.7e-5597.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A6J1I0W1 serine/arginine-rich splicing factor SR45a-like isoform X42.0e-5696.64Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEKFF
        KYLNRSVLEGRIITVEKFF
Subjt:  KYLNRSVLEGRIITVEKFF

A0A6J1I361 serine/arginine-rich splicing factor SR45a-like isoform X24.9e-5596.58Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A6J1I474 serine/arginine-rich splicing factor SR45a-like isoform X14.9e-5596.58Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS DVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

SwissProt top hitse value%identityAlignment
Q10422 Uncharacterized RNA-binding protein C25G10.012.9e-1242.5Show/hide
Query:  ENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK
        EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P T+ SRGFGF++ S+ +EA   I  LN     GR++ V+K
Subjt:  ENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK

Q14151 Scaffold attachment factor B23.2e-1142.86Show/hide
Query:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK
        G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA +CI +L+R+ L GR+I+VEK
Subjt:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK

Q39061 RNA-binding protein CP33, chloroplastic7.9e-1045.83Show/hide
Query:  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITV
        LYV  L   IT  EL + F   GTV+DV +V D  T  SRGFGF+TM S +EA+  ++  N S + GR + V
Subjt:  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITV

Q80YR5 Scaffold attachment factor B21.4e-1142.86Show/hide
Query:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK
        G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA +CI +L+R+ L GR+I+VEK
Subjt:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK

Q84TH4 Serine/arginine-rich splicing factor SR45a3.2e-3568.33Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS S D ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRIITVEK
        RCI+ L+ SVL+GR+ITVEK
Subjt:  RCIKYLNRSVLEGRIITVEK

Arabidopsis top hitse value%identityAlignment
AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-3668.33Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS S D ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRIITVEK
        RCI+ L+ SVL+GR+ITVEK
Subjt:  RCIKYLNRSVLEGRIITVEK

AT1G07350.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.2e-4168.22Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS S D ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRIITVEKFFWQQVSCV
        RCI+ L+ SVL+GR+ITVEKF WQQV C+
Subjt:  RCIKYLNRSVLEGRIITVEKFFWQQVSCV

AT4G35785.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-3162.71Show/hide
Query:  SMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERC
        S S SR    SRS S  R VS S SR RSRSRS   +VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERC
Subjt:  SMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERC

Query:  IKYLNRSVLEGRIITVEK
        IKYLN+SVLEGR ITVE+
Subjt:  IKYLNRSVLEGRIITVEK

AT4G35785.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-2962.18Show/hide
Query:  SMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-CDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAER
        S S SR    SRS S  R VS S SR RSRSRS    +VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AER
Subjt:  SMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-CDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAER

Query:  CIKYLNRSVLEGRIITVEK
        CIKYLN+SVLEGR ITVE+
Subjt:  CIKYLNRSVLEGRIITVEK

AT4G35785.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-2959.52Show/hide
Query:  SMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-CDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAER
        S S SR    SRS S  R VS S SR RSRSRS    +VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AER
Subjt:  SMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-CDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAER

Query:  CIKYLNRSVLEGRIITVEKFFWQQVS
        CIKYLN+SVLEGR ITVE+    Q +
Subjt:  CIKYLNRSVLEGRIITVEKFFWQQVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATTTCTCCAAGTCTGCAGATCCCAGAAACTTCTCTCGCCTCGAGGCTATATATAAGGCTTTTGGCTTTCGTACGCAAAGCCCAATTTGATGCGTGTATATGTGA
GCTCGAGAGCGAGCAGAGAAGAAGTTTCGGTTACAGCTTCGATTTAGGTTTTGCTTCAGCTGATTTCGGTGCATATTCATGGGATGCGAATGGAGTATTTTCTATGTCGT
ACTCCAGAAGGTCTAGGTACTCCCGATCTCCTTCCTACAAACGATCGGTCTCAAGGTCTTTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCATGTGACGTTGAAAAT
CCTGGTAACAATTTGTACGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTACTAGATGTTCATCTTGTGGCTGA
TCCATGGACTAGGGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGATGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGAATAA
TCACTGTGGAAAAGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCATTTCTCCAAGTCTGCAGATCCCAGAAACTTCTCTCGCCTCGAGGCTATATATAAGGCTTTTGGCTTTCGTACGCAAAGCCCAATTTGATGCGTGTATATGTGA
GCTCGAGAGCGAGCAGAGAAGAAGTTTCGGTTACAGCTTCGATTTAGGTTTTGCTTCAGCTGATTTCGGTGCATATTCATGGGATGCGAATGGAGTATTTTCTATGTCGT
ACTCCAGAAGGTCTAGGTACTCCCGATCTCCTTCCTACAAACGATCGGTCTCAAGGTCTTTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCATGTGACGTTGAAAAT
CCTGGTAACAATTTGTACGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTACTAGATGTTCATCTTGTGGCTGA
TCCATGGACTAGGGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGATGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGAATAA
TCACTGTGGAAAAGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAG
Protein sequenceShow/hide protein sequence
MVISPSLQIPETSLASRLYIRLLAFVRKAQFDACICELESEQRRSFGYSFDLGFASADFGAYSWDANGVFSMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSCDVEN
PGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKFFWQQVSCV