; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0019049 (gene) of Snake gourd v1 genome

Gene IDTan0019049
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA-directed RNA polymerase II subunit 4
Genome locationLG05:78906982..78911045
RNA-Seq ExpressionTan0019049
SyntenyTan0019049
Gene Ontology termsGO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0031990 - mRNA export from nucleus in response to heat stress (biological process)
GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex (biological process)
GO:0045948 - positive regulation of translational initiation (biological process)
GO:0000932 - P-body (cellular component)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0031369 - translation initiation factor binding (molecular function)
InterPro domainsIPR005574 - RNA polymerase subunit RPB4/RPC9
IPR006590 - RNA polymerase Rpb4/RPC9, core
IPR010997 - HRDC-like superfamily
IPR038324 - Rpb4/RPC9 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2287510.1 hypothetical protein GH714_001039 [Hevea brasiliensis]1.6e-6797.83Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPS+KTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

KAG8649808.1 hypothetical protein MANES_08G141900v8 [Manihot esculenta]1.6e-6797.83Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPS+KTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

XP_021619869.1 DNA-directed RNA polymerase II subunit 4 [Manihot esculenta]1.6e-6797.83Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPS+KTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

XP_021622194.1 DNA-directed RNA polymerase II subunit 4-like [Manihot esculenta]3.6e-6797.1Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKSLQYVKRFSRYKNPDAV+QVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPS+KTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

XP_022133507.1 DNA-directed RNA polymerase II subunit 4 [Momordica charantia]1.2e-6798.55Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMS+D MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

TrEMBL top hitse value%identityAlignment
A0A251KVF2 RPOL4c domain-containing protein7.8e-6897.83Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPS+KTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

A0A2C9VG74 RPOL4c domain-containing protein7.8e-6897.83Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPS+KTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

A0A6A6KF05 RPOL4c domain-containing protein7.8e-6897.83Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPS+KTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

A0A6J1BWW4 DNA-directed RNA polymerase II subunit 46.0e-6898.55Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMS+D MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

B9H5K4 RPOL4c domain-containing protein1.7e-6797.1Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGD+FLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEAIAMVPS+KTKGRAHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

SwissProt top hitse value%identityAlignment
O15514 DNA-directed RNA polymerase II subunit RPB41.4e-2140.88Show/hide
Query:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET
        +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q +   D+   ++S+VF K+L Y  RFSR+KN + +  VR +L + +L +FEL  L NLCPET
Subjt:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET

Query:  VEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
         EE+ A++PSL  +GR  +DE ++++L+D+   + F+
Subjt:  VEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

O48890 DNA-directed RNA polymerase II subunit 45.8e-6893.48Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ+S+D MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEA+AMVPSLKTKGRAHDDEAIEKMLNDLSL+K+FE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

Q54S04 DNA-directed RNA polymerase II subunit rpb41.1e-1836.73Show/hide
Query:  EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK----------YEQ---LQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE
        +EEE+   LK   +   AK L+N EV+++LEH+          + Q   L  +  +++N + + F K+L Y ++FSRYKN  +++QVR  LS+  L EFE
Subjt:  EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK----------YEQ---LQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE

Query:  LCVLGNLCPETVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKF
        +  L NLCPE  +EA +++PSLK      +D+ ++ +L++LS ++KF
Subjt:  LCVLGNLCPETVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKF

Q9D7M8 DNA-directed RNA polymerase II subunit RPB41.4e-2140.88Show/hide
Query:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET
        +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q +   D+   ++S+VF K+L Y  RFSR+KN + +  VR +L + +L +FEL  L NLCPET
Subjt:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET

Query:  VEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
         EE+ A++PSL  +GR  +DE ++++L+D+   + F+
Subjt:  VEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE

Q9VEA5 DNA-directed RNA polymerase II subunit Rpb42.3e-1638.89Show/hide
Query:  EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA
        +E+AA+L+   EF  A+ L+  EV ++L+H+  + Q  S D   + S+VF K+  Y   F ++KN + +   R +L + +L +FEL  LGNLCPE  EEA
Subjt:  EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA

Query:  IAMVPSLKTKGRAHDDEAIEKMLNDL
         A++PSL  +GR  +DE + ++L+D+
Subjt:  IAMVPSLKTKGRAHDDEAIEKMLNDL

Arabidopsis top hitse value%identityAlignment
AT4G15950.1 RNA polymerase II, Rpb4, core protein1.5e-1536.44Show/hide
Query:  AKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRAHD
        A+C+M+CE   IL+    QL  +S+D   ++   ++++L YV+    Y NP +VR+V E L  Y +++ E+CV+ N   E+V+E +A +PSLKTK +   
Subjt:  AKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRAHD

Query:  DEAIEKMLNDLSLIKKFE
        ++ ++  L +LS +KK E
Subjt:  DEAIEKMLNDLSLIKKFE

AT5G09920.1 RNA polymerase II, Rpb4, core protein4.1e-6993.48Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ+S+D MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE
        TVEEA+AMVPSLKTKGRAHDDEAIEKMLNDLSL+K+FE
Subjt:  TVEEAIAMVPSLKTKGRAHDDEAIEKMLNDLSLIKKFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAGAGGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAAGCAAAGTGTTTAATGAATTGTGAGGTTTCTTTGATCCTTGAACACAAATA
TGAGCAACTTCAGCAAATGTCAGATGATGCAATGAATCAAGTTTCTCAAGTGTTCGAAAAATCACTGCAGTATGTGAAACGCTTTAGCCGCTATAAAAATCCTGATGCTG
TTAGACAAGTTCGAGAAATTTTAAGCAGGTACCAATTGGCTGAGTTTGAGCTTTGTGTTCTTGGCAACCTTTGCCCCGAAACTGTAGAGGAAGCTATTGCCATGGTACCA
TCTTTGAAGACTAAAGGAAGGGCGCATGACGATGAAGCAATAGAGAAAATGTTGAACGATCTTTCATTGATAAAAAAGTTCGAGTAG
mRNA sequenceShow/hide mRNA sequence
GTTCTCTCCTTTCGTGTTTGTCTCGTATTCGTCGACTTTGCCTTCGTTCAGCCCACCATCGCTCGCCTGCCTTCGACTACTCAGCCGCCGTTATCGTCGACTCCTTCCAT
CGTCGTCGCCGTCGCCGTCGCTCCCTATTAGAAATTTCGCTGGAAGAACCAAGCATCTGATTTACTTGCCGAACTAATATCTGGAACAACAACAAAGAACCAAGCATCTT
CTGGGTTTAGTTTGCTGATATTTCCGATAATCTCACATACAAGATTCTGTTAGTTGAACGAAATTCAACTTCAAGCATGTCTGGAGAGGAGGAAGAAAATGCTGCAGAGC
TTAAAATTGGGGATGAGTTCTTAAAAGCAAAGTGTTTAATGAATTGTGAGGTTTCTTTGATCCTTGAACACAAATATGAGCAACTTCAGCAAATGTCAGATGATGCAATG
AATCAAGTTTCTCAAGTGTTCGAAAAATCACTGCAGTATGTGAAACGCTTTAGCCGCTATAAAAATCCTGATGCTGTTAGACAAGTTCGAGAAATTTTAAGCAGGTACCA
ATTGGCTGAGTTTGAGCTTTGTGTTCTTGGCAACCTTTGCCCCGAAACTGTAGAGGAAGCTATTGCCATGGTACCATCTTTGAAGACTAAAGGAAGGGCGCATGACGATG
AAGCAATAGAGAAAATGTTGAACGATCTTTCATTGATAAAAAAGTTCGAGTAGATATTTTCTAAAACTTGTTTTCTCATTTTCTCCAGAGAATTATGCCCTTCTGTCAGT
ATTATGATTTTATTGGTAATTTGTTATTGTGATATTTAACAATGTATGATATGCTTTTTCTTTTTTAGCTATTAAATGATAAACTCTTATACCCAA
Protein sequenceShow/hide protein sequence
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVP
SLKTKGRAHDDEAIEKMLNDLSLIKKFE