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Tan0019113 (gene) of Snake gourd v1 genome

Gene IDTan0019113
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H
Genome locationLG06:14725321..14726250
RNA-Seq ExpressionTan0019113
SyntenyTan0019113
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RWW49536.1 hypothetical protein BHE74_00044279 [Ensete ventricosum]3.0e-1029.86Show/hide
Query:  VPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIKWYTNGA-------------------------TLTTIVAELRDERFLWSLGKKAPTTYVEL
        +P+ F+LP ++ YDGS DP EH+  F + M L+   DA+ W   G+                          +   +  LR  RF WSL ++ PTT  E+
Subjt:  VPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIKWYTNGA-------------------------TLTTIVAELRDERFLWSLGKKAPTTYVEL

Query:  LTMAQKYMSARELLPVYPNECPYRTDPDGIIETLIQKGQLKEYV
        L  A +Y++A  L+     E   +  P G    LI++  L+ YV
Subjt:  LTMAQKYMSARELLPVYPNECPYRTDPDGIIETLIQKGQLKEYV

RZS27166.1 hypothetical protein BHM03_00060598, partial [Ensete ventricosum]4.4e-0939.33Show/hide
Query:  VPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIKWYTNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELL
        +P+ F+LP+++ YDGS D  EH+  FR+ M L+ + DA+ W   G         LR  RF WSL ++ PTT  E+L  A +YM+   L+
Subjt:  VPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIKWYTNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELL

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]4.0e-1027.98Show/hide
Query:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------
        M+ +VP KFKLPT+K +DG+ D V+HLD +R WM+++GV +A+K              W+                                        
Subjt:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------

Query:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARE
                               TN  +L   ++++RDE   +S GKK P+T+ E L+ AQKYMSA E
Subjt:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARE

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]8.8e-1026.23Show/hide
Query:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------
        M+E+VP KFKLPT+K +D + DPV+HLD +R WM+++GV +A++              W+                                        
Subjt:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------

Query:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDP
                               T+  +L   ++ +RDE   +S GK+ P T+ E L+ AQ+YMSA E           RTDP
Subjt:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDP

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]4.0e-1026.49Show/hide
Query:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------
        M+E+VP KFKLPT+K +DG  +PV+HLD +R WM+++GV DAI+              W+                                        
Subjt:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------

Query:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDPDG
                               T+  +L   ++ +RDE   +S  K+ P+T+ E L+ AQ+YMSA E        C  + +PDG
Subjt:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDPDG

TrEMBL top hitse value%identityAlignment
A0A2N9G8N5 Ribonuclease H3.1e-0832.73Show/hide
Query:  VPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY-------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMA
        +PSKF++P+++ +DGSKDP++HL++F++ M L GV D I               W+        +   LT  ++ L+   FL+S+ K  P+T  E++  A
Subjt:  VPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY-------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMA

Query:  QKYMSARELL
        Q++M+  E L
Subjt:  QKYMSARELL

A0A6J1D7D2 uncharacterized protein LOC1110183071.9e-1027.98Show/hide
Query:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------
        M+ +VP KFKLPT+K +DG+ D V+HLD +R WM+++GV +A+K              W+                                        
Subjt:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------

Query:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARE
                               TN  +L   ++++RDE   +S GKK P+T+ E L+ AQKYMSA E
Subjt:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARE

A0A6J1DWY0 uncharacterized protein LOC1110252934.3e-1026.23Show/hide
Query:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------
        M+E+VP KFKLPT+K +D + DPV+HLD +R WM+++GV +A++              W+                                        
Subjt:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------

Query:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDP
                               T+  +L   ++ +RDE   +S GK+ P T+ E L+ AQ+YMSA E           RTDP
Subjt:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDP

A0A6J1DZ49 uncharacterized protein LOC1110248512.1e-0926.47Show/hide
Query:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------
        M+E+   KFKLP I  YDGS DP++HLD +R W +++ +R+AI+              W+                                        
Subjt:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------

Query:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELL
                               T+   L   V+ ++DER ++S GK+ P T++E L+ AQKYMSA EL+
Subjt:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELL

A0A6J1E1E7 uncharacterized protein LOC1110255481.9e-1026.49Show/hide
Query:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------
        M+E+VP KFKLPT+K +DG  +PV+HLD +R WM+++GV DAI+              W+                                        
Subjt:  MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY----------------------------------------

Query:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDPDG
                               T+  +L   ++ +RDE   +S  K+ P+T+ E L+ AQ+YMSA E        C  + +PDG
Subjt:  -----------------------TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDPDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAGGAAGTCCCCTCGAAATTCAAGCTGCCAACGATCAAGGCCTACGATGGATCGAAAGATCCAGTGGAACACCTTGACACATTTCGGTCATGGATGGAACTTCA
TGGAGTCCGAGATGCGATCAAGTGGTATACTAATGGTGCAACCCTAACAACGATCGTAGCCGAACTGCGAGACGAGAGGTTCCTTTGGTCGCTAGGTAAGAAAGCTCCAA
CAACTTACGTTGAGTTACTGACCATGGCTCAAAAGTATATGAGTGCAAGAGAATTGCTTCCGGTATACCCCAACGAGTGTCCCTATCGAACAGATCCTGATGGAATCATA
GAAACGCTGATCCAGAAAGGACAATTGAAGGAATATGTCAGCGCAAGTGGGCGACGCGAGGCCAGATCGAGTCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAGGAAGTCCCCTCGAAATTCAAGCTGCCAACGATCAAGGCCTACGATGGATCGAAAGATCCAGTGGAACACCTTGACACATTTCGGTCATGGATGGAACTTCA
TGGAGTCCGAGATGCGATCAAGTGGTATACTAATGGTGCAACCCTAACAACGATCGTAGCCGAACTGCGAGACGAGAGGTTCCTTTGGTCGCTAGGTAAGAAAGCTCCAA
CAACTTACGTTGAGTTACTGACCATGGCTCAAAAGTATATGAGTGCAAGAGAATTGCTTCCGGTATACCCCAACGAGTGTCCCTATCGAACAGATCCTGATGGAATCATA
GAAACGCTGATCCAGAAAGGACAATTGAAGGAATATGTCAGCGCAAGTGGGCGACGCGAGGCCAGATCGAGTCGGTAG
Protein sequenceShow/hide protein sequence
MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIKWYTNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDPDGII
ETLIQKGQLKEYVSASGRREARSSR