; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0019249 (gene) of Snake gourd v1 genome

Gene IDTan0019249
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L23, chloroplastic
Genome locationContig00127:188311..188590
RNA-Seq ExpressionTan0019249
SyntenyTan0019249
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001014 - Ribosomal protein L23/L25, conserved site
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ATL61329.1 ribosomal protein L23 [Rubia horrida]1.8e-1556.99Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++ I          RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
KAG5626516.1 hypothetical protein H5410_011734 [Solanum commersonii]1.9e-1778.79Show/hide
Query:  MDGIKYAVFTDKSIRLLGKINIL--------LIRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK              RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKINIL--------LIRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
YP_009633459.1 ribosomal protein L23 [Noronhia brevituba]1.8e-1556.99Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++           IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
YP_009700223.1 ribosomal protein L23 [Justicia flava]1.8e-1556.99Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++           IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
YP_010147081.1 ribosomal protein L23 [Neopicrorhiza scrophulariiflora]2.3e-1555.91Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++ +          RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
TrEMBL top hitse value%identityAlignment
A0A5J6BWK0 50S ribosomal protein L23, chloroplastic8.5e-1656.99Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++           IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
A0A5J6NHS1 50S ribosomal protein L23, chloroplastic8.5e-1656.99Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++           IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
A0A6B9M4G0 50S ribosomal protein L23, chloroplastic8.5e-1656.99Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++           IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
A0A6B9M825 50S ribosomal protein L23, chloroplastic8.5e-1656.99Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++           IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
A0A7H1KLF4 50S ribosomal protein L23, chloroplastic8.5e-1656.99Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++           IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILL----------IRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
SwissProt top hitse value%identityAlignment
A0A378 50S ribosomal protein L23, chloroplastic5.1e-1855.91Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++ +          RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Q33BY9 50S ribosomal protein L23, chloroplastic5.1e-1855.91Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++ +          RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Q3C1N5 50S ribosomal protein L23, chloroplastic5.1e-1855.91Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++ +          RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Q4VZK6 50S ribosomal protein L23, chloroplastic5.1e-1855.91Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++ +          RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Q7FNR4 50S ribosomal protein L23, chloroplastic5.1e-1855.91Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++ +          RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Arabidopsis top hitse value%identityAlignment
ATCG00840.1 ribosomal protein L23.18.1e-1954.84Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++ +          RMGPI+GHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
ATCG01300.1 ribosomal protein L238.1e-1954.84Show/hide
Query:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGK                         + ++ +          RMGPI+GHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGK-------------------------INILLI----------RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAATCAATATACTTCTAATAAGAATGGGACCTATTATGGGACATACAATGCATTA
CAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAATCAATATACTTCTAATAAGAATGGGACCTATTATGGGACATACAATGCATTA
CAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA
Protein sequenceShow/hide protein sequence
MDGIKYAVFTDKSIRLLGKINILLIRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT