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Tan0019280 (gene) of Snake gourd v1 genome

Gene IDTan0019280
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG08:37139845..37146547
RNA-Seq ExpressionTan0019280
SyntenyTan0019280
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]7.6e-2167.44Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+GVKMAREKL + +DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

KAA0063387.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]3.4e-2160.78Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLAD
        DV+   + LHVPEG IT+ KAKKIQEAFT+H+QKL NAQ ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+D TE++K    +   FDL   HPL  
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLAD

Query:  SL
         L
Subjt:  SL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]1.7e-2067.44Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ E K FEPK LYNVS+ SQ+E+ +KMA EKL SL+DGT D+KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]1.5e-2168.6Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.0e-2161.76Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLAD
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT ++K    +   FDL   HPL  
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLAD

Query:  SL
         L
Subjt:  SL

TrEMBL top hitse value%identityAlignment
A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein3.7e-2167.44Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+GVKMAREKL + +DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

A0A5A7V8R2 Transposon Ty3-I Gag-Pol polyprotein1.7e-2160.78Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLAD
        DV+   + LHVPEG IT+ KAKKIQEAFT+H+QKL NAQ ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+D TE++K    +   FDL   HPL  
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLAD

Query:  SL
         L
Subjt:  SL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein8.2e-2167.44Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ E K FEPK LYNVS+ SQ+E+ +KMA EKL SL+DGT D+KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

A0A5D3BWE8 F15O4.137.4e-2268.6Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKM

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein9.7e-2261.76Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLAD
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT ++K    +   FDL   HPL  
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLAD

Query:  SL
         L
Subjt:  SL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGCTCGAGCAAAATCTGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCAC
ATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGG
CACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATCTCGTTGGTCGACATCCTTTGGCCGACTCTCTAGAGGTGAAA
TATCTTCAATTTGCTTTACTTTATTTTCTTTCATTTTTTTATCATTTACAAAAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGGAT
GATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAA
ACTTAGGAGGAAGAGGAAATGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTT
TATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACAGGAACAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATCCC
CGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGCTCGAGCAAAATCTGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCAC
ATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGG
CACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATCTCGTTGGTCGACATCCTTTGGCCGACTCTCTAGAGGTGAAA
TATCTTCAATTTGCTTTACTTTATTTTCTTTCATTTTTTTATCATTTACAAAAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGGAT
GATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAA
ACTTAGGAGGAAGAGGAAATGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTT
TATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACAGGAACAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATCCC
CGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAG
Protein sequenceShow/hide protein sequence
MKEARAKSDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKMFDLVGRHPLADSLEVK
YLQFALLYFLSFFYHLQKKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNAKKIQEAFTLHLQKLVNAQGETKIFEPKIL
YNVSTTSQDENGVKMAQEQLSSLKDGTEDKKSVQKIPDQANSGVSRLRI