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Tan0019295 (gene) of Snake gourd v1 genome

Gene IDTan0019295
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG03:73743825..73744866
RNA-Seq ExpressionTan0019295
SyntenyTan0019295
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594897.1 hypothetical protein SDJN03_11450, partial [Cucurbita argyrosperma subsp. sororia]5.7e-5075.8Show/hide
Query:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK
        P +GSPHNAHAKL          AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRL+RLYQHR  + DI PPVK KKELLEV I+IKMEGGTKM+I 
Subjt:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK

Query:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK
           KD PPP     +TARSDTA+RTVPEVKRLDWVKSLRSSA PP+V KNVGF RNK
Subjt:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK

XP_022962743.1 uncharacterized protein LOC111463142 isoform X1 [Cucurbita moschata]2.6e-5075.8Show/hide
Query:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK
        P +GSPHNAHAKL          AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRL+RLYQHR  + DI PPVK+KKELLEV I+IKMEGGTKM+I 
Subjt:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK

Query:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK
           KD PPP     +TARSDTA+RTVPEVKRLDWVKSLRSSA PP+V KNVGF RNK
Subjt:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK

XP_022962744.1 uncharacterized protein LOC111463142 isoform X2 [Cucurbita moschata]2.6e-5075.8Show/hide
Query:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK
        P +GSPHNAHAKL          AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRL+RLYQHR  + DI PPVK+KKELLEV I+IKMEGGTKM+I 
Subjt:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK

Query:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK
           KD PPP     +TARSDTA+RTVPEVKRLDWVKSLRSSA PP+V KNVGF RNK
Subjt:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK

XP_023003824.1 uncharacterized protein LOC111497292 [Cucurbita maxima]3.3e-5073.29Show/hide
Query:  MSIFPSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTK
        +S+ P SGSPHN HAKL          AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRL+RLYQHR  + +I PP+K+KKELLEV I+IKMEGGTK
Subjt:  MSIFPSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTK

Query:  MKIKETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK
        M+IKE     PPP     +TARSDTA+RTVPEVKRLDWVKSLRSSA PP+V KNVGF RNK
Subjt:  MKIKETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK

XP_023517469.1 uncharacterized protein LOC111781225 [Cucurbita pepo subsp. pepo]2.6e-5075.8Show/hide
Query:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK
        P +GSPHNAHAKL          AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRL+RLYQHR  + DI PPVK+KKELLEV I+IKMEGGTKM+I 
Subjt:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK

Query:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK
           KD PPP     +TARSDTA+RTVPEVKRLDWVKSLRSSA PP+V KNVGF RNK
Subjt:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK

TrEMBL top hitse value%identityAlignment
A0A0A0KJZ6 Uncharacterized protein2.6e-4067.33Show/hide
Query:  MSIFPSSGSPH-NAHAKLA-----------ISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGG
        MS+FP S SPH NAHA +            ISEEEMKIRREIE EIERDLEEEIKGGIYQQALRL RLY  RKN+  I P  K+KKELLEV I+IKM+GG
Subjt:  MSIFPSSGSPH-NAHAKLA-----------ISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGG

Query:  TKMKIKETKKDAPP-----PKTARSDTAARTVPEVKRLDWVKSLRSSAPP
        TKM+IKETKK+AP      P+T+RS+T +R+VPE+KRLDW KSLRSSA P
Subjt:  TKMKIKETKKDAPP-----PKTARSDTAARTVPEVKRLDWVKSLRSSAPP

A0A1S3B1F7 uncharacterized protein LOC1034849421.5e-4066.03Show/hide
Query:  MSIFPSSGSPH-NAHAKLA-----------ISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGG
        MS+   S SPH NAHA +            ISEEEMKIRREIE EIERDLEEEIKGGIYQQALRL RLY HRKN+  IKP  K+ KELLEV I+IKM+GG
Subjt:  MSIFPSSGSPH-NAHAKLA-----------ISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGG

Query:  TKMKIKETKKDAPP-----PKTARSDTAARTVPEVKRLDWVKSLRSSAPP-PLVVK
        TKM+I+ETKK+APP     P+T+RS+T +R+VPE+KRLDW KSLRSSA P P V K
Subjt:  TKMKIKETKKDAPP-----PKTARSDTAARTVPEVKRLDWVKSLRSSAPP-PLVVK

A0A6J1HFP1 uncharacterized protein LOC111463142 isoform X11.2e-5075.8Show/hide
Query:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK
        P +GSPHNAHAKL          AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRL+RLYQHR  + DI PPVK+KKELLEV I+IKMEGGTKM+I 
Subjt:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK

Query:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK
           KD PPP     +TARSDTA+RTVPEVKRLDWVKSLRSSA PP+V KNVGF RNK
Subjt:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK

A0A6J1HHY9 uncharacterized protein LOC111463142 isoform X21.2e-5075.8Show/hide
Query:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK
        P +GSPHNAHAKL          AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRL+RLYQHR  + DI PPVK+KKELLEV I+IKMEGGTKM+I 
Subjt:  PSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIK

Query:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK
           KD PPP     +TARSDTA+RTVPEVKRLDWVKSLRSSA PP+V KNVGF RNK
Subjt:  ETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK

A0A6J1KUF8 uncharacterized protein LOC1114972921.6e-5073.29Show/hide
Query:  MSIFPSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTK
        +S+ P SGSPHN HAKL          AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRL+RLYQHR  + +I PP+K+KKELLEV I+IKMEGGTK
Subjt:  MSIFPSSGSPHNAHAKL----------AISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTK

Query:  MKIKETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK
        M+IKE     PPP     +TARSDTA+RTVPEVKRLDWVKSLRSSA PP+V KNVGF RNK
Subjt:  MKIKETKKDAPPP-----KTARSDTAARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G26290.1 unknown protein6.3e-1544.23Show/hide
Query:  SPHNAHAKLAISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDI-KPPVKSKKELLEVTITIKMEGGTKMKIKETKKDAPPPKTAR
        S  NA  +L +S++E +IR E+E EIER+LE E K GIY  AL+L+RLY+ R+   ++    ++  K +LEV I IKMEG TK++I E KK+    KT +
Subjt:  SPHNAHAKLAISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDI-KPPVKSKKELLEVTITIKMEGGTKMKIKETKKDAPPPKTAR

Query:  SDTA
        ++ +
Subjt:  SDTA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATTTTTCCATCAAGTGGATCTCCTCATAATGCTCATGCAAAACTGGCAATTTCGGAAGAAGAGATGAAGATCAGGCGAGAAATTGAAAGAGAGATAGAGAGAGA
TTTGGAGGAAGAGATTAAGGGAGGGATATACCAACAGGCTCTCCGGCTGCAACGCCTTTATCAGCACCGCAAAAACGCCGTTGATATTAAGCCGCCGGTCAAATCCAAGA
AGGAGCTTTTGGAGGTAACTATCACCATCAAAATGGAAGGAGGAACCAAGATGAAAATTAAAGAGACCAAAAAGGACGCGCCGCCGCCGAAGACTGCCCGGTCCGACACC
GCTGCTCGAACTGTTCCGGAGGTGAAAAGGTTGGATTGGGTGAAGTCTCTCCGGTCGAGTGCGCCGCCGCCGCTTGTTGTCAAAAACGTCGGCTTTTGTCGGAATAAAAA
TTTATTCGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAATTTTTCCATCAAGTGGATCTCCTCATAATGCTCATGCAAAACTGGCAATTTCGGAAGAAGAGATGAAGATCAGGCGAGAAATTGAAAGAGAGATAGAGAGAGA
TTTGGAGGAAGAGATTAAGGGAGGGATATACCAACAGGCTCTCCGGCTGCAACGCCTTTATCAGCACCGCAAAAACGCCGTTGATATTAAGCCGCCGGTCAAATCCAAGA
AGGAGCTTTTGGAGGTAACTATCACCATCAAAATGGAAGGAGGAACCAAGATGAAAATTAAAGAGACCAAAAAGGACGCGCCGCCGCCGAAGACTGCCCGGTCCGACACC
GCTGCTCGAACTGTTCCGGAGGTGAAAAGGTTGGATTGGGTGAAGTCTCTCCGGTCGAGTGCGCCGCCGCCGCTTGTTGTCAAAAACGTCGGCTTTTGTCGGAATAAAAA
TTTATTCGTTTAA
Protein sequenceShow/hide protein sequence
MSIFPSSGSPHNAHAKLAISEEEMKIRREIEREIERDLEEEIKGGIYQQALRLQRLYQHRKNAVDIKPPVKSKKELLEVTITIKMEGGTKMKIKETKKDAPPPKTARSDT
AARTVPEVKRLDWVKSLRSSAPPPLVVKNVGFCRNKNLFV