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Tan0019308 (gene) of Snake gourd v1 genome

Gene IDTan0019308
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG08:66526250..66526633
RNA-Seq ExpressionTan0019308
SyntenyTan0019308
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG57539.1 hypothetical protein EZV62_015368 [Acer yangbiense]7.8e-0839.36Show/hide
Query:  VDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDVFI
        +D A D  +GR G G+ IRD  GR+L A     D  ++   +EA  I++GL L ++ G   L I SDSL  V +  G + T SD+ N +SD+ I
Subjt:  VDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDVFI

TXG71894.1 hypothetical protein EZV62_000473 [Acer yangbiense]1.5e-0635.42Show/hide
Query:  VHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV
        + + VDAA D  + +  VG+ IRD +GR+L +   V +   +   +EA  I++GL L    G   L I SDSL  V + NG ++T +D+ N + D+
Subjt:  VHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV

XP_030502555.1 uncharacterized protein LOC115717715 [Cannabis sativa]7.3e-0637.37Show/hide
Query:  DTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV
        +T + + VDAA D S+ +IG+GV IRD +G ++AAM+            EA  +F GLQL E+L     ++ +D L  V  ING  +  S  H+ V D+
Subjt:  DTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV

XP_042941317.1 uncharacterized protein LOC122275981 [Carya illinoinensis]4.7e-0533.64Show/hide
Query:  RSLWRKEDTW-VHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDI
        ++ W K   W V +  DAA D    R+G GV IRD  G LLA + ++ D   NP  +EAL +     L   LG+S + +  DS   V  +N      ++ 
Subjt:  RSLWRKEDTW-VHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDI

Query:  HNYVSDV
         N + DV
Subjt:  HNYVSDV

XP_042958132.1 uncharacterized protein LOC122293688 [Carya illinoinensis]4.7e-0528.8Show/hide
Query:  VTKKDTCNIEASRSLWRKEDTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAM
        V K+ T     + S  + +  W     DA+ D++ G++GVGV +RD N +++A +  V ++F +P  +EA      + L   LG+  + +  DSL    +
Subjt:  VTKKDTCNIEASRSLWRKEDTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAM

Query:  INGLLNTTSDIHNYVSDVFISTPEV
        + G L + S+  NYV  +   T E+
Subjt:  INGLLNTTSDIHNYVSDVFISTPEV

TrEMBL top hitse value%identityAlignment
A0A2I4HHX4 uncharacterized protein LOC1090179476.7e-0530.21Show/hide
Query:  KKDTCNIEASRSL--WRKEDT-WVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSL
        K D CN +AS ++  W+     W  +  D A D+ KG IG+GV IRD +G+++A +     ++ +P  +E+      ++L   +G  ++ +  DSL
Subjt:  KKDTCNIEASRSL--WRKEDT-WVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSL

A0A5C7HDG5 RNase H domain-containing protein6.7e-0537.21Show/hide
Query:  VDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMIN--GLLNTTSD
        VDAA D+ +GR+G+G+ IRD NG +LA+     D F  P  +EA+ I  GL     +G     + SD+   V ++N  GL+ +  D
Subjt:  VDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMIN--GLLNTTSD

A0A5C7HL89 RNase H domain-containing protein3.8e-0839.36Show/hide
Query:  VDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDVFI
        +D A D  +GR G G+ IRD  GR+L A     D  ++   +EA  I++GL L ++ G   L I SDSL  V +  G + T SD+ N +SD+ I
Subjt:  VDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDVFI

A0A5C7IST2 RNase H domain-containing protein7.1e-0735.42Show/hide
Query:  VHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV
        + + VDAA D  + +  VG+ IRD +GR+L +   V +   +   +EA  I++GL L    G   L I SDSL  V + NG ++T +D+ N + D+
Subjt:  VHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV

A0A803PKJ2 Uncharacterized protein1.1e-0433.33Show/hide
Query:  DTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV
        +T + + VDAA D S+ +IG+GV IRD +G ++ AM+            EA  +F GLQ  + L     ++ +D +  V  ING  +  S  H+ V D+
Subjt:  DTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTGACCAAAAAGGATACGTGCAACATTGAGGCAAGTCGAAGCTTGTGGAGGAAGGAAGACACATGGGTGCACATTTTTGTCGATGCAGCTTGTGATGAGTCTAA
GGGTCGAATAGGTGTTGGGGTCGATATTCGAGATCCTAATGGACGATTGTTGGCAGCTATGACTAATGTTCATGACATCTTTATCAACCCGGCATGTTCAGAAGCATTGC
CCATTTTCGATGGTTTGCAGCTAGTAGAGCGTTTAGGATACTCTAAGCTACATATTTTTTCGGACTCATTGACCAATGTGGCTATGATTAATGGGCTACTGAATACAACA
TCTGATATTCACAACTACGTTAGTGATGTTTTTATCTCTACGCCGGAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTGACCAAAAAGGATACGTGCAACATTGAGGCAAGTCGAAGCTTGTGGAGGAAGGAAGACACATGGGTGCACATTTTTGTCGATGCAGCTTGTGATGAGTCTAA
GGGTCGAATAGGTGTTGGGGTCGATATTCGAGATCCTAATGGACGATTGTTGGCAGCTATGACTAATGTTCATGACATCTTTATCAACCCGGCATGTTCAGAAGCATTGC
CCATTTTCGATGGTTTGCAGCTAGTAGAGCGTTTAGGATACTCTAAGCTACATATTTTTTCGGACTCATTGACCAATGTGGCTATGATTAATGGGCTACTGAATACAACA
TCTGATATTCACAACTACGTTAGTGATGTTTTTATCTCTACGCCGGAAGTTTGA
Protein sequenceShow/hide protein sequence
MNVTKKDTCNIEASRSLWRKEDTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTT
SDIHNYVSDVFISTPEV