; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0019313 (gene) of Snake gourd v1 genome

Gene IDTan0019313
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPSII 6.1 kDa protein
Genome locationLG06:9646028..9648011
RNA-Seq ExpressionTan0019313
SyntenyTan0019313
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]5.1e-5390.71Show/hide
Query:  MAAVTS-AAAAVRTSLVQNRP-LPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP
        MAAVTS AAAAVRTSLVQNRP LP+ASPAP LLGLPALGKKGGVRCSME GK NGEVENKSS   MGASL+ AAACAATMSSPAMALVDERLSTEGTGLP
Subjt:  MAAVTS-AAAAVRTSLVQNRP-LPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIWAFYIVYTS+LEEDEESGLSL
Subjt:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

KAG6575946.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.6e-5389.21Show/hide
Query:  MAAVTSAAAA-VRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAVTSAAAA VR+SLVQNRPLPAASPAP LLGLPALGKKGGVRCSME GKANG+VENKSS  GMGASL+ AAA AA+MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSAAAA-VRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        GLSNNLLGWIL GVFG IWAFYI+YTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]1.7e-5390.65Show/hide
Query:  MAAVTSAAAA-VRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAVTSAAAA VRTSLVQNR LP+ASPAP LLGLPALGKKGGVRCSME GK NGEVENKSS  GMGASL+ AAACAATMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSAAAA-VRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        GLSNNLLGWIL GVF LIWAFYIVYTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]6.0e-5491.43Show/hide
Query:  MAAVTS-AAAAVRTSLVQNRP-LPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP
        MAAVTS AAAAVRTSLVQNRP LP+ASPAP LLGLPALGKKGGVRCSME GK NGEVENKSS  GMGASL+ AAACAATMSSPAMALVDERLSTEGTGLP
Subjt:  MAAVTS-AAAAVRTSLVQNRP-LPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIWAFYIVYTS+LEEDEESGLSL
Subjt:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]1.9e-5592.09Show/hide
Query:  MAAVTSAA-AAVRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAVTSAA A  RTSLVQNRPLPAASPAP LLGLPALGKKGGVRCSME GK NGEVENKSS  GMGASL+ AAACAATMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSAA-AAVRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        GLSNNLLGWILFGVFGLIWAFYIVYTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein8.4e-5490.65Show/hide
Query:  MAAVTSAAAA-VRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAVTSAAAA VRTSLVQNR LP+ASPAP LLGLPALGKKGGVRCSME GK NGEVENKSS  GMGASL+ AAACAATMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSAAAA-VRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        GLSNNLLGWIL GVF LIWAFYIVYTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein2.9e-5491.43Show/hide
Query:  MAAVTS-AAAAVRTSLVQNRP-LPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP
        MAAVTS AAAAVRTSLVQNRP LP+ASPAP LLGLPALGKKGGVRCSME GK NGEVENKSS  GMGASL+ AAACAATMSSPAMALVDERLSTEGTGLP
Subjt:  MAAVTS-AAAAVRTSLVQNRP-LPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIWAFYIVYTS+LEEDEESGLSL
Subjt:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein2.5e-5390.71Show/hide
Query:  MAAVTS-AAAAVRTSLVQNRP-LPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP
        MAAVTS AAAAVRTSLVQNRP LP+ASPAP LLGLPALGKKGGVRCSME GK NGEVENKSS   MGASL+ AAACAATMSSPAMALVDERLSTEGTGLP
Subjt:  MAAVTS-AAAAVRTSLVQNRP-LPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIWAFYIVYTS+LEEDEESGLSL
Subjt:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein7.1e-5388.49Show/hide
Query:  MAAVTSAAAA-VRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAVTSAAAA VR+SLVQNRPLPAASP+P LLGLPALGKKGGVRCSME GKANG+VENKSS  GMGASL+ AAA AA+MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSAAAA-VRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        GLSNNLLGWIL GVFG IWAFYI+YTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

A0A6J1KYY4 PSII 6.1 kDa protein1.8e-5184.89Show/hide
Query:  MAAVTSA-AAAVRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAV SA AAAVR+SLVQNRPLPAASP   LLGLPALGK+GGVRC ++ GKANGEVENKS   GMGASL+AA ACAA MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSA-AAAVRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        GLSNNLLGWIL GVFG IW FYIVYTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.6e-3361.87Show/hide
Query:  MAAVTSAAAAVRTSLVQNRPLPAASPAPLLLGLPALG-KKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF
        MA+ T++A+ V  +       P  + +  +LGLP +G KKGGVRCSME  + N  V       G G S  A AA  A MS+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAAAVRTSLVQNRPLPAASPAPLLLGLPALG-KKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        GLSNNLLGWILFGVFGLIW F+ VYTSSLEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic1.6e-3363.04Show/hide
Query:  MAAVTSAAAAVRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPFG
        + A +SA+   R SLV N  +  +S    +LGLP++ K+  V CS+E   +  E    ++KS MGASL+AAAA AAT+S+PAMALVDER+STEGTGLPFG
Subjt:  MAAVTSAAAAVRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        LSNNLLGWILFGVFGLIWA Y VY S LEEDEESGLSL
Subjt:  LSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic2.2e-2256.2Show/hide
Query:  MAAVTSAAAAVRTSLVQNRPLPAASPAPLLLGLPALGKKGG--VRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP
        MA V++AAA   TS+V    L  A P    LGLP +  +    VRC+     A      K    G GASL+A AA AA    PAMALVDER+STEGTGL 
Subjt:  MAAVTSAAAAVRTSLVQNRPLPAASPAPLLLGLPALGKKGG--VRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESG
         GLSNNLLGWIL GVFGLIW+ Y +YTS LEEDEESG
Subjt:  FGLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic2.7e-0944.44Show/hide
Query:  MAAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAFYIVYTSSLE--EDEESGLSL
        M +   A   + PA ALVDER++ +GTG PFG+++ +LGW+L GVFG +WA + +    L   ED + GL L
Subjt:  MAAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAFYIVYTSSLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.1e-3461.87Show/hide
Query:  MAAVTSAAAAVRTSLVQNRPLPAASPAPLLLGLPALG-KKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF
        MA+ T++A+ V  +       P  + +  +LGLP +G KKGGVRCSME  + N  V       G G S  A AA  A MS+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAAAVRTSLVQNRPLPAASPAPLLLGLPALG-KKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL
        GLSNNLLGWILFGVFGLIW F+ VYTSSLEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSSLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCCGCCGTGCGCACTTCTCTGGTTCAGAACCGCCCGCTGCCGGCGGCTTCACCCGCCCCATTGCTTCTTGGGTTGCCTGCATTGGG
AAAGAAAGGAGGAGTGAGATGTTCGATGGAATTAGGAAAGGCAAATGGAGAAGTAGAAAACAAGTCAAGCAAGTCGGGGATGGGCGCGTCGTTGATGGCTGCAGCGGCGT
GTGCTGCGACGATGTCGAGTCCAGCCATGGCTTTGGTGGATGAAAGATTGAGCACTGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTG
TTTGGGGTTTTTGGTCTGATATGGGCATTCTATATCGTTTACACTTCTTCTCTTGAAGAGGACGAGGAATCAGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
GGCACTCAAACACCAACAAATAATATTAATCTTTACAAACCCTTTGTTCTTCACTCCCCCAAATTGCATTATTTTCCATATTCCTCCCAAAGTTCAACAGCAAAAAATCA
GATGGCCGCCGTCACCTCCGCCGCCGCCGCCGTGCGCACTTCTCTGGTTCAGAACCGCCCGCTGCCGGCGGCTTCACCCGCCCCATTGCTTCTTGGGTTGCCTGCATTGG
GAAAGAAAGGAGGAGTGAGATGTTCGATGGAATTAGGAAAGGCAAATGGAGAAGTAGAAAACAAGTCAAGCAAGTCGGGGATGGGCGCGTCGTTGATGGCTGCAGCGGCG
TGTGCTGCGACGATGTCGAGTCCAGCCATGGCTTTGGTGGATGAAAGATTGAGCACTGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCT
GTTTGGGGTTTTTGGTCTGATATGGGCATTCTATATCGTTTACACTTCTTCTCTTGAAGAGGACGAGGAATCAGGCTTATCTCTTTAATTAAACCCAAACTCCTCCTCTT
ATTATTATGATATATTTGCCTCTGGTTTAATTCGTATCATCATCAAAGCCTTTTGTTGGAATATCCATGTAGAAAAAGAAGGAAAAGTGTACTGGTTCAAAACTACTACG
TTTCATGGTCAAATATTTTCTCCTCCCTTTTCTTTCTAAATTAATTTGGCTAATACACGCATGTTTACATGTCTTTTTCTTTTTCTATTTCTTTTGCATGATTGATATGA
AATGGCACCTGTCGCCAATCCATAATTTTTTTTTTAAAAAATATGTAACAGAGAAAAATAAAGTAAAAATTGGATGTAAACAATCAGGTTGAGACATGGGTAATTCGTTC
TCTTTAAGAAGATTCAAGCCTCTATCGTGTATATTTATTTATCAA
Protein sequenceShow/hide protein sequence
MAAVTSAAAAVRTSLVQNRPLPAASPAPLLLGLPALGKKGGVRCSMELGKANGEVENKSSKSGMGASLMAAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL
FGVFGLIWAFYIVYTSSLEEDEESGLSL