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Tan0019318 (gene) of Snake gourd v1 genome

Gene IDTan0019318
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionzf-CCHC_4 domain-containing protein
Genome locationLG02:78482088..78482720
RNA-Seq ExpressionTan0019318
SyntenyTan0019318
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS74010.1 Os01g0714300 [Oryza sativa Japonica Group]5.0e-0441.51Show/hide
Query:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP
        G+ +GTFL+ D+ ++  + G  +RI+IR+D+ +PL RG+ + IG  E+ +WCP
Subjt:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.7e-0435.82Show/hide
Query:  MAPIYGNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCPQNHRSKAPD
        MA   GN +G F+  D ++  FSWG+++RIR+ +D+++PL+RG+ + I       W P  +  + PD
Subjt:  MAPIYGNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCPQNHRSKAPD

XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]8.6e-0435.85Show/hide
Query:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP
        G  +GTF+  D+ +   + G  +RI++R+D+ +PL RG+M+ +G  ++ +WCP
Subjt:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]1.3e-0433.96Show/hide
Query:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP
        G  LG F++ D+ + +F+ G  +R+++R+++ +PL+RG+M+ +G   ++ WCP
Subjt:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]3.0e-0433.96Show/hide
Query:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP
        G  LG F++ D+ +  F+ G  +R+++R+++ +PL+RG+M+ +G   ++ WCP
Subjt:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP

TrEMBL top hitse value%identityAlignment
A0A0B2PNF8 zf-CCHC_4 domain-containing protein9.3e-0451.06Show/hide
Query:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVME
        GN LG+F+K D S+ ++  G +MR+RI +D+++PL+RG+M+KIGV E
Subjt:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVME

A0A0P0V7D8 Os01g0714300 protein2.4e-0441.51Show/hide
Query:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP
        G+ +GTFL+ D+ ++  + G  +RI+IR+D+ +PL RG+ + IG  E+ +WCP
Subjt:  GNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCP

A0A6J1DU55 uncharacterized protein LOC1110231358.4e-0535.82Show/hide
Query:  MAPIYGNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCPQNHRSKAPD
        MA   GN +G F+  D ++  FSWG+++RIR+ +D+++PL+RG+ + I       W P  +  + PD
Subjt:  MAPIYGNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCPQNHRSKAPD

A0A6J1DX30 uncharacterized protein LOC1110248745.4e-0438.81Show/hide
Query:  MAPIYGNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCPQNHRSKAPD
        MA   GN LG F +AD  D    WGS +R+R+ +D+S+PL+RG+ L +       W P  +  + PD
Subjt:  MAPIYGNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCPQNHRSKAPD

A0A803P119 Uncharacterized protein2.2e-0544.78Show/hide
Query:  MAPIYGNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCPQNHRSKAPD
        MA I G+ +G FLK D    +  WG  MRIRI +DV++PL RG +LKI  + +D+W    +  K PD
Subjt:  MAPIYGNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCPQNHRSKAPD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCCGATATATGGCAACCGGCTCGGGACTTTCCTTAAAGCCGATGTATCGGATTCGAAATTTAGCTGGGGGAGCACGATGCGGATTCGAATTAGAGTGGACGTTTC
TGAACCTCTAAAGAGAGGATTGATGTTGAAAATCGGAGTGATGGAAGAAGACATCTGGTGTCCGCAAAACCACCGCTCAAAAGCACCAGATTCGAGAGGAAGAGGACGAA
CCAGTCGAGGAAGAGGCGGGGTTGCTGACCCGAGGAAGATAGTGGACAATGAGGCAACGGATAATCCAAACTGTAGCCCTGTCTCACCGATCCGAACCAAAAAGAATGAG
GGTGAAGACCACACGACGGAAGCAGCAGATCAAGGATCAGGGAAGAAGATGGGCGGCGAGCCGGAGGATGGGCAGTTGTCCGACGACTTTCAGAGCATATTAAATGCTAT
TAATTTCTCTGCCTCAACGGAACCAAAGAAGGACGAAACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCCGATATATGGCAACCGGCTCGGGACTTTCCTTAAAGCCGATGTATCGGATTCGAAATTTAGCTGGGGGAGCACGATGCGGATTCGAATTAGAGTGGACGTTTC
TGAACCTCTAAAGAGAGGATTGATGTTGAAAATCGGAGTGATGGAAGAAGACATCTGGTGTCCGCAAAACCACCGCTCAAAAGCACCAGATTCGAGAGGAAGAGGACGAA
CCAGTCGAGGAAGAGGCGGGGTTGCTGACCCGAGGAAGATAGTGGACAATGAGGCAACGGATAATCCAAACTGTAGCCCTGTCTCACCGATCCGAACCAAAAAGAATGAG
GGTGAAGACCACACGACGGAAGCAGCAGATCAAGGATCAGGGAAGAAGATGGGCGGCGAGCCGGAGGATGGGCAGTTGTCCGACGACTTTCAGAGCATATTAAATGCTAT
TAATTTCTCTGCCTCAACGGAACCAAAGAAGGACGAAACGTGA
Protein sequenceShow/hide protein sequence
MAPIYGNRLGTFLKADVSDSKFSWGSTMRIRIRVDVSEPLKRGLMLKIGVMEEDIWCPQNHRSKAPDSRGRGRTSRGRGGVADPRKIVDNEATDNPNCSPVSPIRTKKNE
GEDHTTEAADQGSGKKMGGEPEDGQLSDDFQSILNAINFSASTEPKKDET