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Tan0019364 (gene) of Snake gourd v1 genome

Gene IDTan0019364
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationLG06:71210843..71215599
RNA-Seq ExpressionTan0019364
SyntenyTan0019364
Gene Ontology termsGO:0048507 - meristem development (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34152.1 hypothetical protein [Cucumis melo subsp. melo]1.5e-1249.43Show/hide
Query:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINV----RRMNVNVQNFEETPIQSVDP
        M+G+SLGVD+ ++ I+I+YRHP LT SG+V+FM+  I N Q MN MFSIA+  PN+VHLY+ V      +N+NV+         VDP
Subjt:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINV----RRMNVNVQNFEETPIQSVDP

KAA0034013.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]3.1e-1331.15Show/hide
Query:  WHLRRQHIAEAPPVDAFG-DTTLDYANWYLSITRRFITAEGASYGQAILNLCDVGENNLDNLHNMYNIPTAPPPGPRHRRHVQQED-IEE-----EELP-
        WH RR+  A  PP++ F  D T +Y NWY +I++ +IT  GA+    +LN+C+  E  ++N+H MY++P  P P  R R  VQ+ D +EE     EE+P 
Subjt:  WHLRRQHIAEAPPVDAFG-DTTLDYANWYLSITRRFITAEGASYGQAILNLCDVGENNLDNLHNMYNIPTAPPPGPRHRRHVQQED-IEE-----EELP-

Query:  ----------------IPVYIHT-------------PGTHDSEAG----------------PSSS--HGVVRGRDDDDD------PSSHEEELDEPPVQ-
                        +P +  T              G ++SEAG                PSSS  HG  RGR + ++      P++  E+ +E   Q 
Subjt:  ----------------IPVYIHT-------------PGTHDSEAG----------------PSSS--HGVVRGRDDDDD------PSSHEEELDEPPVQ-

Query:  --------------------QEEAPRGRRRQPPRNRRRPPCGTH
                            Q++  + RRRQP RNRRRP CGTH
Subjt:  --------------------QEEAPRGRRRQPPRNRRRPPCGTH

KAA0036768.1 uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]1.5e-1254.67Show/hide
Query:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINV----RRMNVNVQ
        M+G+SLGVD+ ++ I+I+YRHP LT SG+V+FM   I N Q MN MFSIA+S PN+VHLY+ V      +N+NV+
Subjt:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINV----RRMNVNVQ

KAA0041167.1 uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa]2.9e-3550Show/hide
Query:  MGDKSVGFVLHTNESMIDGVHDVDYDQPACGGFSLNVNSGIAFEQFLEMIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMS
        M DK +GF+L  N +MIDG   +DYDQPACGGF+++VNSGI FEQF+E++G S+G+D+R + I+I+YRHP+LT SG ++FM   IPN QAM  MFSIAM 
Subjt:  MGDKSVGFVLHTNESMIDGVHDVDYDQPACGGFSLNVNSGIAFEQFLEMIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMS

Query:  IPNLVHLYINVRRMNVNVQNFEETPIQSVDPSLGVESSQCLDPDPQIVGT-PCDDEDM
        I N+VHLY+NV R+++++    ++  Q  D       +Q + PD ++V +   DDE+M
Subjt:  IPNLVHLYINVRRMNVNVQNFEETPIQSVDPSLGVESSQCLDPDPQIVGT-PCDDEDM

TYJ98387.1 hypothetical protein E5676_scaffold232G001340 [Cucumis melo var. makuwa]9.1e-1341.44Show/hide
Query:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINVRRMNVNVQ-NFEETPIQSVDPSLGVESSQCLDPDPQI
        M+G+S+GVD+ ++ I+I+YRHP LT SG+V+FM   I N Q MN MFSIA+  PN+VHLY+ V  +++ +  N E T ++           + +D DP+ 
Subjt:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINVRRMNVNVQ-NFEETPIQSVDPSLGVESSQCLDPDPQI

Query:  VGTP-CDDEDM
           P C +E+M
Subjt:  VGTP-CDDEDM

TrEMBL top hitse value%identityAlignment
A0A5A7SU33 Serine/threonine-protein phosphatase 7 long form-like protein1.5e-1331.15Show/hide
Query:  WHLRRQHIAEAPPVDAFG-DTTLDYANWYLSITRRFITAEGASYGQAILNLCDVGENNLDNLHNMYNIPTAPPPGPRHRRHVQQED-IEE-----EELP-
        WH RR+  A  PP++ F  D T +Y NWY +I++ +IT  GA+    +LN+C+  E  ++N+H MY++P  P P  R R  VQ+ D +EE     EE+P 
Subjt:  WHLRRQHIAEAPPVDAFG-DTTLDYANWYLSITRRFITAEGASYGQAILNLCDVGENNLDNLHNMYNIPTAPPPGPRHRRHVQQED-IEE-----EELP-

Query:  ----------------IPVYIHT-------------PGTHDSEAG----------------PSSS--HGVVRGRDDDDD------PSSHEEELDEPPVQ-
                        +P +  T              G ++SEAG                PSSS  HG  RGR + ++      P++  E+ +E   Q 
Subjt:  ----------------IPVYIHT-------------PGTHDSEAG----------------PSSS--HGVVRGRDDDDD------PSSHEEELDEPPVQ-

Query:  --------------------QEEAPRGRRRQPPRNRRRPPCGTH
                            Q++  + RRRQP RNRRRP CGTH
Subjt:  --------------------QEEAPRGRRRQPPRNRRRPPCGTH

A0A5A7T1X8 SWIM-type domain-containing protein7.5e-1354.67Show/hide
Query:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINV----RRMNVNVQ
        M+G+SLGVD+ ++ I+I+YRHP LT SG+V+FM   I N Q MN MFSIA+S PN+VHLY+ V      +N+NV+
Subjt:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINV----RRMNVNVQ

A0A5A7THR5 Uncharacterized protein1.4e-3550Show/hide
Query:  MGDKSVGFVLHTNESMIDGVHDVDYDQPACGGFSLNVNSGIAFEQFLEMIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMS
        M DK +GF+L  N +MIDG   +DYDQPACGGF+++VNSGI FEQF+E++G S+G+D+R + I+I+YRHP+LT SG ++FM   IPN QAM  MFSIAM 
Subjt:  MGDKSVGFVLHTNESMIDGVHDVDYDQPACGGFSLNVNSGIAFEQFLEMIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMS

Query:  IPNLVHLYINVRRMNVNVQNFEETPIQSVDPSLGVESSQCLDPDPQIVGT-PCDDEDM
        I N+VHLY+NV R+++++    ++  Q  D       +Q + PD ++V +   DDE+M
Subjt:  IPNLVHLYINVRRMNVNVQNFEETPIQSVDPSLGVESSQCLDPDPQIVGT-PCDDEDM

A0A5D3BFY6 Uncharacterized protein7.5e-1349.43Show/hide
Query:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINV----RRMNVNVQNFEETPIQSVDP
        M+G+SLGVD+ ++ I+I+YRHP LT SG+V+FM+  I N Q MN MFSIA+  PN+VHLY+ V      +N+NV+         VDP
Subjt:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINV----RRMNVNVQNFEETPIQSVDP

A0A5D3BGY9 Uncharacterized protein4.4e-1341.44Show/hide
Query:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINVRRMNVNVQ-NFEETPIQSVDPSLGVESSQCLDPDPQI
        M+G+S+GVD+ ++ I+I+YRHP LT SG+V+FM   I N Q MN MFSIA+  PN+VHLY+ V  +++ +  N E T ++           + +D DP+ 
Subjt:  MIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYINVRRMNVNVQ-NFEETPIQSVDPSLGVESSQCLDPDPQI

Query:  VGTP-CDDEDM
           P C +E+M
Subjt:  VGTP-CDDEDM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGATAAATCAGTGGGATTTGTTTTGCATACGAATGAGTCTATGATTGATGGGGTACATGATGTAGATTATGACCAACCAGCATGTGGTGGTTTTTCTCTGAATGT
GAATAGTGGAATAGCCTTTGAACAGTTCCTGGAAATGATAGGCATGTCACTTGGTGTAGATGTGAGGGCAAATCATATTGACATAGTTTATAGACACCCTGAACTAACGC
TATCTGGATCAGTAAAGTTTATGACAATATCAATCCCTAACTATCAAGCAATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAAATTTAGTACATTTATATATCAAT
GTAAGAAGGATGAATGTGAATGTACAAAACTTTGAAGAAACGCCTATTCAATCTGTTGATCCTAGCCTAGGTGTTGAATCCAGCCAATGTCTTGACCCAGATCCTCAAAT
AGTTGGTACACCGTGTGATGATGAAGATATGTGGCATTTGCGCAGACAACACATAGCGGAAGCTCCACCAGTTGATGCATTCGGAGATACCACTCTAGACTATGCAAATT
GGTATTTGAGCATTACAAGGCGTTTCATCACTGCTGAAGGAGCATCATATGGGCAAGCGATACTGAATCTGTGTGATGTTGGAGAAAATAATTTAGATAATCTACATAAC
ATGTACAACATTCCTACTGCTCCTCCTCCTGGTCCTCGACATAGAAGACATGTTCAACAGGAGGATATTGAAGAAGAGGAGCTGCCCATACCTGTATATATTCATACTCC
TGGCACACATGATTCTGAGGCAGGCCCCTCATCATCGCATGGCGTGGTTCGTGGCCGAGATGATGATGATGATCCATCTTCACATGAGGAAGAATTAGATGAACCACCGG
TGCAACAGGAGGAAGCCCCGAGGGGTCGTCGTCGACAACCCCCTCGTAATAGACGACGTCCACCTTGTGGCACACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGATAAATCAGTGGGATTTGTTTTGCATACGAATGAGTCTATGATTGATGGGGTACATGATGTAGATTATGACCAACCAGCATGTGGTGGTTTTTCTCTGAATGT
GAATAGTGGAATAGCCTTTGAACAGTTCCTGGAAATGATAGGCATGTCACTTGGTGTAGATGTGAGGGCAAATCATATTGACATAGTTTATAGACACCCTGAACTAACGC
TATCTGGATCAGTAAAGTTTATGACAATATCAATCCCTAACTATCAAGCAATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAAATTTAGTACATTTATATATCAAT
GTAAGAAGGATGAATGTGAATGTACAAAACTTTGAAGAAACGCCTATTCAATCTGTTGATCCTAGCCTAGGTGTTGAATCCAGCCAATGTCTTGACCCAGATCCTCAAAT
AGTTGGTACACCGTGTGATGATGAAGATATGTGGCATTTGCGCAGACAACACATAGCGGAAGCTCCACCAGTTGATGCATTCGGAGATACCACTCTAGACTATGCAAATT
GGTATTTGAGCATTACAAGGCGTTTCATCACTGCTGAAGGAGCATCATATGGGCAAGCGATACTGAATCTGTGTGATGTTGGAGAAAATAATTTAGATAATCTACATAAC
ATGTACAACATTCCTACTGCTCCTCCTCCTGGTCCTCGACATAGAAGACATGTTCAACAGGAGGATATTGAAGAAGAGGAGCTGCCCATACCTGTATATATTCATACTCC
TGGCACACATGATTCTGAGGCAGGCCCCTCATCATCGCATGGCGTGGTTCGTGGCCGAGATGATGATGATGATCCATCTTCACATGAGGAAGAATTAGATGAACCACCGG
TGCAACAGGAGGAAGCCCCGAGGGGTCGTCGTCGACAACCCCCTCGTAATAGACGACGTCCACCTTGTGGCACACACTGA
Protein sequenceShow/hide protein sequence
MGDKSVGFVLHTNESMIDGVHDVDYDQPACGGFSLNVNSGIAFEQFLEMIGMSLGVDVRANHIDIVYRHPELTLSGSVKFMTISIPNYQAMNLMFSIAMSIPNLVHLYIN
VRRMNVNVQNFEETPIQSVDPSLGVESSQCLDPDPQIVGTPCDDEDMWHLRRQHIAEAPPVDAFGDTTLDYANWYLSITRRFITAEGASYGQAILNLCDVGENNLDNLHN
MYNIPTAPPPGPRHRRHVQQEDIEEEELPIPVYIHTPGTHDSEAGPSSSHGVVRGRDDDDDPSSHEEELDEPPVQQEEAPRGRRRQPPRNRRRPPCGTH