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Tan0019405 (gene) of Snake gourd v1 genome

Gene IDTan0019405
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG03:19144270..19144656
RNA-Seq ExpressionTan0019405
SyntenyTan0019405
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]7.8e-1649.07Show/hide
Query:  EDDLPDTPTSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKT
        E+DLP+TPTS + T G SS   GSKRKRS + +E++DVVRT M MQT+H++++ +W  +K E ++ARRK V D L QI  L  +D V L+ +L+T+++K+
Subjt:  EDDLPDTPTSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKT

Query:  DCFLQVPL
          FL+VP+
Subjt:  DCFLQVPL

XP_038877407.1 uncharacterized protein LOC120069696 [Benincasa hispida]3.9e-2353.85Show/hide
Query:  VGEDDLPDTPT--SRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTD
        + +D++ + PT  S   TS       GSKRKRSSFQ E+ID++R+T++M ++HM +L SWQK+KYELE  R+KEVV+ +Y I+GL E  +V+LIDL+VTD
Subjt:  VGEDDLPDTPT--SRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTD

Query:  IQKTDCFLQVPLNRERR
        IQKTDCFL VP +  +R
Subjt:  IQKTDCFLQVPLNRERR

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]2.5e-2253.78Show/hide
Query:  VGEDDLPDTP----TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLV
        + +D++ + P    T R +    SSR  GSKRKRSSFQ E+ID+V++T++MQ++HM +L SWQ EKYELE+   KEVV+ +Y I+ L E+D+V+LIDL+V
Subjt:  VGEDDLPDTP----TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLV

Query:  TDIQKTDCFLQVPLNRERR
        TDIQKTDCFL VP +  +R
Subjt:  TDIQKTDCFLQVPLNRERR

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]6.6e-1564.71Show/hide
Query:  QTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKTDCFLQVPLNRERR
        +++HM +L SWQKEKYELE  RRKEVV+ +Y I+GL E D+V+LIDLLVTDIQKT+CFL VP +  +R
Subjt:  QTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKTDCFLQVPLNRERR

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]3.2e-2556.3Show/hide
Query:  VGEDDLPDTP----TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLV
        + +D++ + P    T R +    SSR  GSKRKR SFQ E+ID++R+T++MQ++HM +L SWQKEKYELE  RRKEVV+ +Y I+GL E D+V+ IDLLV
Subjt:  VGEDDLPDTP----TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLV

Query:  TDIQKTDCFLQVPLNRERR
        TDIQKTDCFL VP +  +R
Subjt:  TDIQKTDCFLQVPLNRERR

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.5e-0433.33Show/hide
Query:  TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKTDCFLQVP
        + RRN S +      SKRKR S + E ++V+R+ M+     ++ +  W KEK  +EV  R +VV  L  I  L   DR  L+ +L   ++  + FL +P
Subjt:  TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKTDCFLQVP

A0A5A7U0H7 Retrotransposon protein1.5e-0433.33Show/hide
Query:  TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKTDCFLQVP
        + RRN S +      SKRKR S + E ++V+R+ M+     ++ +  W KEK  +EV  R +VV  L  I  L   DR  L+ +L   ++  + FL +P
Subjt:  TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKTDCFLQVP

A0A5D3C7T4 Uncharacterized protein8.8e-0533.07Show/hide
Query:  NP-GLGGVGEDDLPDTPTSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLID
        NP GL     +D+P TPTS  + +G SSR     +KR S+  +L+D  R +M   +  + ++ +WQ+EK E+E +  K +   L  I G+   D + + +
Subjt:  NP-GLGGVGEDDLPDTPTSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLID

Query:  LLVTDIQKTDCFLQVPLNRERRIACVF
         L+ D      FL  P N     ACVF
Subjt:  LLVTDIQKTDCFLQVPLNRERRIACVF

A0A5D3CT52 Retrotransposon protein8.8e-0535Show/hide
Query:  TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKTDCFLQVPL
        + RRN S      +GSKRKR S   E ++V+R+ M+     ++ + +W KEK   EV  R EVV  L  I  L   DR  L+ +L   ++  + FL +P+
Subjt:  TSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKTDCFLQVPL

A0A6J1DW73 uncharacterized protein LOC1110250183.8e-1649.07Show/hide
Query:  EDDLPDTPTSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKT
        E+DLP+TPTS + T G SS   GSKRKRS + +E++DVVRT M MQT+H++++ +W  +K E ++ARRK V D L QI  L  +D V L+ +L+T+++K+
Subjt:  EDDLPDTPTSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKT

Query:  DCFLQVPL
          FL+VP+
Subjt:  DCFLQVPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATCCAGGACTTGGTGGCGTAGGGGAAGATGACTTGCCAGACACTCCTACTAGTAGGCGTAATACATCTGGCATGTCTTCTAGATGTACTGGGAGCAAAAGAAA
ACGATCGTCCTTCCAGACTGAATTAATTGATGTTGTGCGGACAACAATGGATATGCAGACCAGTCACATGCAACAACTTCTATCATGGCAGAAGGAGAAGTATGAATTGG
AGGTCGCACGAAGGAAGGAAGTAGTCGATCTCTTGTATCAGATAGAAGGATTGGCTGAGCATGATCGTGTCTCCCTGATTGATTTGCTTGTGACTGATATCCAGAAGACT
GATTGCTTTCTACAGGTTCCGCTCAATCGAGAAAGGCGTATTGCATGCGTCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATCCAGGACTTGGTGGCGTAGGGGAAGATGACTTGCCAGACACTCCTACTAGTAGGCGTAATACATCTGGCATGTCTTCTAGATGTACTGGGAGCAAAAGAAA
ACGATCGTCCTTCCAGACTGAATTAATTGATGTTGTGCGGACAACAATGGATATGCAGACCAGTCACATGCAACAACTTCTATCATGGCAGAAGGAGAAGTATGAATTGG
AGGTCGCACGAAGGAAGGAAGTAGTCGATCTCTTGTATCAGATAGAAGGATTGGCTGAGCATGATCGTGTCTCCCTGATTGATTTGCTTGTGACTGATATCCAGAAGACT
GATTGCTTTCTACAGGTTCCGCTCAATCGAGAAAGGCGTATTGCATGCGTCTTCTAG
Protein sequenceShow/hide protein sequence
MENPGLGGVGEDDLPDTPTSRRNTSGMSSRCTGSKRKRSSFQTELIDVVRTTMDMQTSHMQQLLSWQKEKYELEVARRKEVVDLLYQIEGLAEHDRVSLIDLLVTDIQKT
DCFLQVPLNRERRIACVF