CuGenDBv2

Gene ID	Tan0019424
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ATP synthase epsilon chain, chloroplastic
Genome location	LG10:27682100..27682327
RNA-Seq Expression	Tan0019424
Synteny	Tan0019424
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR001469 - ATP synthase, F1 complex, delta/epsilon subunit

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009752081.1 CF1 subunit epsilon [Dendrosicyos socotranus]

7.5e-27

90.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRART VE +NG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

YP_009752249.1 CF1 subunit epsilon [Trichosanthes baviensis]

1.2e-27

93.33

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRARTLVE VNG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

YP_009752418.1 CF1 subunit epsilon [Trichosanthes tricuspidata]

4.4e-27

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRARTLVE V+G+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

YP_009752502.1 CF1 subunit epsilon [Trichosanthes tubiflora]

2.0e-27

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLE+ EAN RKAQGKRQTIEANLALRRARTLVE VNG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

YP_009752587.1 CF1 subunit epsilon [Trichosanthes homophylla]

1.2e-27

93.33

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRARTLVE VNG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

TrEMBL top hits

e value

%identity

Alignment

A0A6H0EQJ8 ATP synthase epsilon chain, chloroplastic

5.6e-28

93.33

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRARTLVE VNG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

A0A6H0ERT4 ATP synthase epsilon chain, chloroplastic

5.6e-28

93.33

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRARTLVE VNG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

A0A6H0EU32 ATP synthase epsilon chain, chloroplastic

5.6e-28

93.33

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRARTLVE VNG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

A0A6M3S4N3 ATP synthase epsilon chain, chloroplastic

5.6e-28

93.33

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRARTLVE VNG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

A0A6M3S6T1 ATP synthase epsilon chain, chloroplastic

5.6e-28

93.33

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRARTLVE VNG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

SwissProt top hits

e value

%identity

Alignment

A0ZZ41 ATP synthase epsilon chain, chloroplastic

3.0e-26

84.93

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGI
        MALMGGFARIGNNE+TILVND EK SDIDPQEAQQ LEI EAN RKA+GKRQTIEANLALRRART VE +N I
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGI

Q09MH2 ATP synthase epsilon chain, chloroplastic

1.0e-26

86.3

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGI
        MALMGGFARIGNNE+TILVND EK+SDIDPQEAQQTLEI EAN RKA+ KRQTIEANLALRRART VEV+N I
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGI

Q49KZ2 ATP synthase epsilon chain, chloroplastic

3.0e-26

83.56

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGI
        MALMGGFARIGNNE+TILVND EK SDIDPQEAQ+TLE+ EAN RKA+GKRQTIEANLALRRART VE +N I
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGI

Q4VZG9 ATP synthase epsilon chain, chloroplastic

9.9e-30

90.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEI EAN RKAQGKRQTIEANLALRRART VE +NG+PS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

Q70XZ7 ATP synthase epsilon chain, chloroplastic

3.0e-26

82.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS
        MALMGGFARIGNNE+TILVND EK SDIDPQEAQQTLEI EAN  +A+GKRQTIEANLALRRART VE +N I S
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00470.1 ATP synthase epsilon chain

2.8e-27

86.3

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGI
        MALMGGFARIGNNE+TILVND EK SDIDPQEAQQTLEI EAN RKA+GKRQTIEANLALRRART VE +N I
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGI

Sequences

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CDS sequence

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ATGGCTCTGATGGGTGGTTTTGCTAGAATTGGCAATAATGAGGTTACTATTTTAGTAAATGATGGGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAACAAACTCT
TGAAATAGAGGAAGCTAACACGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTTAGACGAGCTAGGACACTAGTAGAGGTTGTCAATGGCATAC
CTAGTTAA

mRNA sequence

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Protein sequence

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MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIEEANTRKAQGKRQTIEANLALRRARTLVEVVNGIPS

Tan0019424 (gene) of Snake gourd v1 genome