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Tan0019524 (gene) of Snake gourd v1 genome

Gene IDTan0019524
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationLG08:70540417..70542544
RNA-Seq ExpressionTan0019524
SyntenyTan0019524
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588139.1 E3 ubiquitin-protein ligase RZF1, partial [Cucurbita argyrosperma subsp. sororia]7.4e-2563.06Show/hide
Query:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR
        MGRRNPYPRF LL E VDA  + R  GR    ++        G+ L  FNSFW FHEH PGP+FASV PEG+SSQHVALEAL ALSFNEQ DP P+PAS 
Subjt:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        SSIEA  TI +
Subjt:  SSIEAKSTINL

XP_022147727.1 probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Momordica charantia]5.3e-2358.56Show/hide
Query:  MGRRNPYPRFGLLEVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVA-LSFNEQWDPDPSPASR
        MGRR+PYPRFGLLE VDAF + R  GR   F++        G+ L FFNSFW FHEH+PGP+FASV PEG+SSQ   L+AL A ++ NE+ DP P+PAS 
Subjt:  MGRRNPYPRFGLLEVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVA-LSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        SSIEA  TI +
Subjt:  SSIEAKSTINL

XP_022933367.1 probable E3 ubiquitin-protein ligase RHC1A [Cucurbita moschata]7.4e-2563.06Show/hide
Query:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR
        MGRRNPYPRF LL E VDA  + R  GR    ++        G+ L  FNSFW FHEH PGP+FASV PEG+SSQHVALEAL ALSFNEQ DP P+PAS 
Subjt:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        SSIEA  TI +
Subjt:  SSIEAKSTINL

XP_022967835.1 probable E3 ubiquitin-protein ligase RHC1A [Cucurbita maxima]1.5e-2563.96Show/hide
Query:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR
        MGRRNPYPRF LL E VDA  + R  GR   F++        G+ L  FNSFW FHEH PGP+FASV PEG+SSQHVALEAL ALSFNEQ DP P+PAS 
Subjt:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        SSIEA  TI +
Subjt:  SSIEAKSTINL

XP_023531171.1 probable E3 ubiquitin-protein ligase RHC1A [Cucurbita pepo subsp. pepo]1.5e-2563.96Show/hide
Query:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR
        MGRRNPYPRF LL E VDA  + R  GR   F++        G+ L  FNSFW FHEH PGP+FASV PEG+SSQHVALEAL ALSFNEQ DP P+PAS 
Subjt:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        SSIEA  TI +
Subjt:  SSIEAKSTINL

TrEMBL top hitse value%identityAlignment
A0A1S3BQN3 RING-type E3 ubiquitin transferase1.3e-2257.66Show/hide
Query:  MGRRNPYPRFGLLEVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVA-LSFNEQWDPDPSPASR
        MGRRNPYPRFGLLE VD F + R  GR   F++        G+ L FFNSFW FH+H+ G TF +VTPEG+SSQH  LE L A LS NEQ +P P+PAS 
Subjt:  MGRRNPYPRFGLLEVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVA-LSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        S IEA  TI +
Subjt:  SSIEAKSTINL

A0A6J1D235 RING-type E3 ubiquitin transferase2.6e-2358.56Show/hide
Query:  MGRRNPYPRFGLLEVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVA-LSFNEQWDPDPSPASR
        MGRR+PYPRFGLLE VDAF + R  GR   F++        G+ L FFNSFW FHEH+PGP+FASV PEG+SSQ   L+AL A ++ NE+ DP P+PAS 
Subjt:  MGRRNPYPRFGLLEVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVA-LSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        SSIEA  TI +
Subjt:  SSIEAKSTINL

A0A6J1D364 RING-type E3 ubiquitin transferase2.6e-2358.56Show/hide
Query:  MGRRNPYPRFGLLEVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVA-LSFNEQWDPDPSPASR
        MGRR+PYPRFGLLE VDAF + R  GR   F++        G+ L FFNSFW FHEH+PGP+FASV PEG+SSQ   L+AL A ++ NE+ DP P+PAS 
Subjt:  MGRRNPYPRFGLLEVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVA-LSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        SSIEA  TI +
Subjt:  SSIEAKSTINL

A0A6J1F4J7 RING-type E3 ubiquitin transferase3.6e-2563.06Show/hide
Query:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR
        MGRRNPYPRF LL E VDA  + R  GR    ++        G+ L  FNSFW FHEH PGP+FASV PEG+SSQHVALEAL ALSFNEQ DP P+PAS 
Subjt:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        SSIEA  TI +
Subjt:  SSIEAKSTINL

A0A6J1HT80 RING-type E3 ubiquitin transferase7.2e-2663.96Show/hide
Query:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR
        MGRRNPYPRF LL E VDA  + R  GR   F++        G+ L  FNSFW FHEH PGP+FASV PEG+SSQHVALEAL ALSFNEQ DP P+PAS 
Subjt:  MGRRNPYPRFGLL-EVVDAFYK-RKNGRK-KFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASR

Query:  SSIEAKSTINL
        SSIEA  TI +
Subjt:  SSIEAKSTINL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCGAAGAAACCCGTATCCAAGATTTGGACTTCTTGAAGTTGTCGATGCTTTTTACAAGAGAAAGAATGGTCGGAAGAAATTCGAATTAGGAGGAGACCTAATTCT
ATCCAAGGGCAGAATTCTAATTTTTTTCAATTCTTTTTGGTTGTTCCATGAACACATTCCTGGTCCAACCTTCGCTAGTGTAACTCCAGAAGGTCAATCGAGTCAGCACG
TGGCACTGGAAGCATTAGTTGCGCTTTCCTTCAACGAACAATGGGATCCAGATCCATCTCCTGCTTCTCGCTCTTCTATAGAAGCAAAGTCTACAATCAATCTTTTGAAT
TCCTTCATTTTCTCAGCATTAGAGCTTGAGGCATCCTCGGAGCAGCAGTGTCTCATCCCTAGCCTATATGCGCTTCTGACTGTGAAAATCCCTCTTATATTATACTTCCA
GACTACTTCATCATTCAACCATGGTCCTGTCCGGGTATCTGCAGAATACGTCTGGCATCTTCCACCTGGAAGTATAGGAGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCGAAGAAACCCGTATCCAAGATTTGGACTTCTTGAAGTTGTCGATGCTTTTTACAAGAGAAAGAATGGTCGGAAGAAATTCGAATTAGGAGGAGACCTAATTCT
ATCCAAGGGCAGAATTCTAATTTTTTTCAATTCTTTTTGGTTGTTCCATGAACACATTCCTGGTCCAACCTTCGCTAGTGTAACTCCAGAAGGTCAATCGAGTCAGCACG
TGGCACTGGAAGCATTAGTTGCGCTTTCCTTCAACGAACAATGGGATCCAGATCCATCTCCTGCTTCTCGCTCTTCTATAGAAGCAAAGTCTACAATCAATCTTTTGAAT
TCCTTCATTTTCTCAGCATTAGAGCTTGAGGCATCCTCGGAGCAGCAGTGTCTCATCCCTAGCCTATATGCGCTTCTGACTGTGAAAATCCCTCTTATATTATACTTCCA
GACTACTTCATCATTCAACCATGGTCCTGTCCGGGTATCTGCAGAATACGTCTGGCATCTTCCACCTGGAAGTATAGGAGTATAG
Protein sequenceShow/hide protein sequence
MGRRNPYPRFGLLEVVDAFYKRKNGRKKFELGGDLILSKGRILIFFNSFWLFHEHIPGPTFASVTPEGQSSQHVALEALVALSFNEQWDPDPSPASRSSIEAKSTINLLN
SFIFSALELEASSEQQCLIPSLYALLTVKIPLILYFQTTSSFNHGPVRVSAEYVWHLPPGSIGV