CuGenDBv2

Gene ID	Tan0019544
Organism	Trichosanthes anguina (Snake gourd v1)
Description	E3 ubiquitin-protein ligase RBBP6 isoform X2
Genome location	LG10:8658021..8659759
RNA-Seq Expression	Tan0019544
Synteny	Tan0019544
Gene Ontology terms	GO:0016020 - membrane (cellular component) GO:0016853 - isomerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004134201.1 uncharacterized protein LOC101221899 isoform X2 [Cucumis sativus]

8.0e-55

82.5

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Query:  MAMDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVD
        M M+DLTEEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDP+ALSSINPQILDLA++NAK SV SS     GTNIRHVD
Subjt:  MAMDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVD

Query:  SFDDPEGSFDEGGEAMNSEPTK-KKKNKKKK---KKNKRQKIVEDSDHGVGKKPKKKLKL
        +FDDPE SFDE GE+MNSEP K KKKNKKKK   KKNKRQKIVEDS+ GVG KPKKKL+L
Subjt:  SFDDPEGSFDEGGEAMNSEPTK-KKKNKKKK---KKNKRQKIVEDSDHGVGKKPKKKLKL

XP_022956118.1 uncharacterized protein LOC111457905 isoform X1 [Cucurbita moschata]

3.4e-53

79.75

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Query:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF
        M+DL+EEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDP+ LSSINPQIL+LA++NAK SVLSS    +GTNIRHVD+F
Subjt:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF

Query:  DDPEGSFDEGGEAMNSEPTKK-------KKNKKKK-KKNKRQ-KIVEDSDHGVGKKPKKKLKL
        DDPE SFD+ GEAMNSEP K+       KKNK KK KKNKRQ KIVEDS  GVGK+PKKKLKL
Subjt:  DDPEGSFDEGGEAMNSEPTKK-------KKNKKKK-KKNKRQ-KIVEDSDHGVGKKPKKKLKL

XP_022956119.1 uncharacterized protein LOC111457905 isoform X2 [Cucurbita moschata]

1.4e-54

80.25

Show/hide

Query:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF
        M+DL+EEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDP+ LSSINPQIL+LA++NAK SVLSS    +GTNIRHVD+F
Subjt:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF

Query:  DDPEGSFDEGGEAMNSEPTKK-------KKNKKKK-KKNKRQKIVEDSDHGVGKKPKKKLKL
        DDPE SFD+ GEAMNSEP K+       KKNK KK KKNKRQKIVEDS  GVGK+PKKKLKL
Subjt:  DDPEGSFDEGGEAMNSEPTKK-------KKNKKKK-KKNKRQKIVEDSDHGVGKKPKKKLKL

XP_022979960.1 uncharacterized protein LOC111479494 [Cucurbita maxima]

8.0e-55

81.25

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Query:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF
        M+DL+EEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDP+ LSSINPQIL+LA++NAK SVLSS    +GTNIRHVD+F
Subjt:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF

Query:  DDPEGSFDEGGEAMNSEP----TKKKKNKKKK--KKNKRQKIVEDSDHGVGKKPKKKLKL
        DDPE SFD+ GEAMNSEP     K KKNKK K  KKNKRQKIVEDS  GVGK+PKKKLKL
Subjt:  DDPEGSFDEGGEAMNSEP----TKKKKNKKKK--KKNKRQKIVEDSDHGVGKKPKKKLKL

XP_038890855.1 uncharacterized protein LOC120080295 [Benincasa hispida]

2.9e-57

83.33

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Query:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF
        M+DLTEEERRALRGSKFAPLPSQ TSSRS PRLAHPGGPLKTNKAAALAKFL+RKLHQDP+ALSSI+PQILDLA++NAK SVLS G+SG+GTNIRHVD+F
Subjt:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF

Query:  DDPEGSFDEGGEAMNSEP--TKKKKNKKKKKKNKRQKIVEDSDHGVGKKPKKKLKL
        DDPE S D+ GEAMNSEP   KKKK KKK KKNKRQKIV DS  GVGKKPKKKL+L
Subjt:  DDPEGSFDEGGEAMNSEP--TKKKKNKKKKKKNKRQKIVEDSDHGVGKKPKKKLKL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAK0 Uncharacterized protein

3.9e-55

82.5

Show/hide

Query:  MAMDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVD
        M M+DLTEEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDP+ALSSINPQILDLA++NAK SV SS     GTNIRHVD
Subjt:  MAMDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVD

Query:  SFDDPEGSFDEGGEAMNSEPTK-KKKNKKKK---KKNKRQKIVEDSDHGVGKKPKKKLKL
        +FDDPE SFDE GE+MNSEP K KKKNKKKK   KKNKRQKIVEDS+ GVG KPKKKL+L
Subjt:  SFDDPEGSFDEGGEAMNSEPTK-KKKNKKKK---KKNKRQKIVEDSDHGVGKKPKKKLKL

A0A1S3AY37 uncharacterized protein LOC103483832

2.8e-53

81.53

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Query:  MAMDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVD
        M M+DLTEEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDP+A SSINPQILDLA++NAK SV SS     GTNIRHVD
Subjt:  MAMDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVD

Query:  SFDDPEGSFDEGGEAMNSEPTK-KKKNKKKK---KKNKRQKIVEDSDHGVGKKPKKK
        +FDDPE SFDE GE+MNSEP K KKKNKKKK   KKNKRQKIVEDS+ GVGK P  K
Subjt:  SFDDPEGSFDEGGEAMNSEPTK-KKKNKKKK---KKNKRQKIVEDSDHGVGKKPKKK

A0A6J1GVW4 uncharacterized protein LOC111457905 isoform X1

1.6e-53

79.75

Show/hide

Query:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF
        M+DL+EEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDP+ LSSINPQIL+LA++NAK SVLSS    +GTNIRHVD+F
Subjt:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF

Query:  DDPEGSFDEGGEAMNSEPTKK-------KKNKKKK-KKNKRQ-KIVEDSDHGVGKKPKKKLKL
        DDPE SFD+ GEAMNSEP K+       KKNK KK KKNKRQ KIVEDS  GVGK+PKKKLKL
Subjt:  DDPEGSFDEGGEAMNSEPTKK-------KKNKKKK-KKNKRQ-KIVEDSDHGVGKKPKKKLKL

A0A6J1GY51 uncharacterized protein LOC111457905 isoform X2

6.6e-55

80.25

Show/hide

Query:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF
        M+DL+EEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDP+ LSSINPQIL+LA++NAK SVLSS    +GTNIRHVD+F
Subjt:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF

Query:  DDPEGSFDEGGEAMNSEPTKK-------KKNKKKK-KKNKRQKIVEDSDHGVGKKPKKKLKL
        DDPE SFD+ GEAMNSEP K+       KKNK KK KKNKRQKIVEDS  GVGK+PKKKLKL
Subjt:  DDPEGSFDEGGEAMNSEPTKK-------KKNKKKK-KKNKRQKIVEDSDHGVGKKPKKKLKL

A0A6J1IUT6 uncharacterized protein LOC111479494

3.9e-55

81.25

Show/hide

Query:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF
        M+DL+EEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDP+ LSSINPQIL+LA++NAK SVLSS    +GTNIRHVD+F
Subjt:  MDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF

Query:  DDPEGSFDEGGEAMNSEP----TKKKKNKKKK--KKNKRQKIVEDSDHGVGKKPKKKLKL
        DDPE SFD+ GEAMNSEP     K KKNKK K  KKNKRQKIVEDS  GVGK+PKKKLKL
Subjt:  DDPEGSFDEGGEAMNSEP----TKKKKNKKKK--KKNKRQKIVEDSDHGVGKKPKKKLKL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G18540.1 unknown protein

8.8e-36

58.28

Show/hide

Query:  DDLTEEERRALRGSKFAPLPSQPTSSRSH-PRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF
        ++LTE+E+RALRGSKFAPL S P+SSRS  PRLAHPGGPLKTNKAAALAKFL+RKL QDP+ L+SI+P +++LA++NAK +V+SSG S +G  I+HV SF
Subjt:  DDLTEEERRALRGSKFAPLPSQPTSSRSH-PRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF

Query:  DDPEGSFDEG-------GEAMNSEPTKKKKNKKKKKKNK--RQKIVEDSDHGVGKKPKKKLKL
        +D E S D+         +    +  KKKK +KKKKKNK  +Q+I  D D  + K+P KKLKL
Subjt:  DDPEGSFDEG-------GEAMNSEPTKKKKNKKKKKKNK--RQKIVEDSDHGVGKKPKKKLKL

AT5G18540.2 unknown protein

3.6e-37

59.01

Show/hide

Query:  DDLTEEERRALRGSKFAPLPSQPTSSRSH-PRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF
        ++LTE+E+RALRGSKFAPL S P+SSRS  PRLAHPGGPLKTNKAAALAKFL+RKL QDP+ L+SI+P +++LA++NAK +V+SSG S +G  I+HV SF
Subjt:  DDLTEEERRALRGSKFAPLPSQPTSSRSH-PRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSF

Query:  DDPEGSFDEG-------GEAMNSEPTKKKKNKKKKKKNKRQKIVEDSDHGVGKKPKKKLKL
        +D E S D+         +    +  KKKK +KKKKKNK+ KI  D D  + K+P KKLKL
Subjt:  DDPEGSFDEG-------GEAMNSEPTKKKKNKKKKKKNKRQKIVEDSDHGVGKKPKKKLKL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGATGGACGATCTAACCGAAGAAGAAAGACGCGCTTTACGGGGCAGCAAATTCGCGCCGCTCCCATCACAACCCACTTCCTCTCGATCTCACCCAAGGTTGGCTCA
CCCTGGTGGACCATTGAAGACCAACAAGGCGGCGGCTCTCGCCAAGTTTCTTCAGAGGAAATTGCATCAAGATCCCCATGCTTTATCTTCTATCAATCCCCAGATTTTGG
ACCTTGCCCTTCAGAATGCCAAACCCTCTGTTCTTTCCAGTGGCACTTCAGGTGCTGGCACAAATATTCGCCATGTGGACTCATTTGATGACCCTGAGGGCTCTTTTGAC
GAAGGTGGGGAAGCCATGAATTCTGAGCCTACAAAGAAAAAGAAGAACAAGAAGAAGAAAAAGAAGAATAAAAGGCAAAAGATTGTTGAGGACTCCGACCATGGCGTTGG
GAAAAAGCCCAAAAAGAAGTTGAAATTGTGA

mRNA sequence

Show/hide mRNA sequence

AATTTACCAAGCATTGTAATTTTCTATGTTTAAAATTAAAATTGACCAAAGAGAGATAAAAAGGTAAAAAGCAATTGAGTACAGTTCGACACGTCGTTCAGGTGCGGGAA
CTGGGACGACAAAGTCGAAAGAGAAGAAAGGAGCAAAGGAGGATGGAAGGCCATTTCAGAGTTTAGGAAAGAAAGAAAGAAAGAAAGAAAATAAAAGAAAAGACTCTGAA
ATTCTAATCCTAATCCATGGCGATGGACGATCTAACCGAAGAAGAAAGACGCGCTTTACGGGGCAGCAAATTCGCGCCGCTCCCATCACAACCCACTTCCTCTCGATCTC
ACCCAAGGTTGGCTCACCCTGGTGGACCATTGAAGACCAACAAGGCGGCGGCTCTCGCCAAGTTTCTTCAGAGGAAATTGCATCAAGATCCCCATGCTTTATCTTCTATC
AATCCCCAGATTTTGGACCTTGCCCTTCAGAATGCCAAACCCTCTGTTCTTTCCAGTGGCACTTCAGGTGCTGGCACAAATATTCGCCATGTGGACTCATTTGATGACCC
TGAGGGCTCTTTTGACGAAGGTGGGGAAGCCATGAATTCTGAGCCTACAAAGAAAAAGAAGAACAAGAAGAAGAAAAAGAAGAATAAAAGGCAAAAGATTGTTGAGGACT
CCGACCATGGCGTTGGGAAAAAGCCCAAAAAGAAGTTGAAATTGTGAGCTGAAAACAAGACATTGATCTCATCTTCTTTATTATAAACTGGACAATTCAGTCTTCAGAAG
ACTGGGGAATAAACTTGAAAGGAGTTCACATGCTGTGTTTTTTTTTTTTTGGCGGAAAGATGGAACCATTTTGGAAGAAAGGCAGCTTTTAAGCAAGCTCTACAGGGCTG
CTGTTCCTGATATTTTGAGCAAGGAGAACTATTAAATCTCAGATTCACGAGTCTAAAACACTTGATTGACTTGATTTCTCTTTGTGAAAAAGTGCTGTTTAGCCTCTCTT
TCTCATGTTGCAACATTATTCTTTTGTTGTCAAATTGCAACTTTCTTCTTTTTCTTATGTTCCAACATTCTTTTGTTGTCAATTTGCAACTTTCTTTAAATCCAATGGCT
TGAATTTCATGGCTTC

Protein sequence

Show/hide protein sequence

MAMDDLTEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPHALSSINPQILDLALQNAKPSVLSSGTSGAGTNIRHVDSFDDPEGSFD
EGGEAMNSEPTKKKKNKKKKKKNKRQKIVEDSDHGVGKKPKKKLKL

Tan0019544 (gene) of Snake gourd v1 genome