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Tan0019577 (gene) of Snake gourd v1 genome

Gene IDTan0019577
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationLG04:11943183..11953578
RNA-Seq ExpressionTan0019577
SyntenyTan0019577
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034014.1 uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]2.2e-1443.86Show/hide
Query:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL
        MN MFSIA+  PN+VHLYV V  +D  + +     ++ P  +   ++ + E+ A P C +E+MV  N Y EF+TET++EFE++DF+   +++PSNTF +L
Subjt:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL

Query:  DSNVLDNTTEHDPI
        D N +D   EHDPI
Subjt:  DSNVLDNTTEHDPI

KAA0055864.1 uncharacterized protein E6C27_scaffold104G00420 [Cucumis melo var. makuwa]1.0e-1443.86Show/hide
Query:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL
        MN MFSIA+  PN+VHLYV V  +D+ + +     ++ P  +   ++ D E+ A P C +E+MV  N Y EF+TETN+E E++D +   +++PSNTF +L
Subjt:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL

Query:  DSNVLDNTTEHDPI
        D N +D   EHDPI
Subjt:  DSNVLDNTTEHDPI

KAA0060519.1 uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa]4.5e-1546.23Show/hide
Query:  MSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATPC-DDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNELDSNVLDNT
        M IPN+VHLYVNV RM +++ ++   +  L     V + PD E VA+   DDE+MV +N Y +F+TET++EFE+ DF+ R H++PSNT  +++ +V+D+ 
Subjt:  MSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATPC-DDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNELDSNVLDNT

Query:  TEHDPI
         EHDPI
Subjt:  TEHDPI

KAA0062731.1 uncharacterized protein E6C27_scaffold382G00620 [Cucumis melo var. makuwa]1.7e-1445.28Show/hide
Query:  MSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVAT-PCDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNELDSNVLDNT
        MSIPN+VHLYVNV R+ +++ ++   +  L     V + PD E VA+   +DE+MV +N Y +F+TETN++FE+ DF+   H++PSNT  ++D +V+D+ 
Subjt:  MSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVAT-PCDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNELDSNVLDNT

Query:  TEHDPI
         EHDPI
Subjt:  TEHDPI

TYK23115.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]1.3e-1443.86Show/hide
Query:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL
        MN MFSIA+  PN+VHLYV V  +D+ + +     ++ P  +   ++ D E+ A P C +E+MV  N Y EF+TET++EFE++DF+   +++PSNTF +L
Subjt:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL

Query:  DSNVLDNTTEHDPI
        D N +D+  E DPI
Subjt:  DSNVLDNTTEHDPI

TrEMBL top hitse value%identityAlignment
A0A5A7SS31 DBD_Tnp_Mut domain-containing protein1.1e-1443.86Show/hide
Query:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL
        MN MFSIA+  PN+VHLYV V  +D  + +     ++ P  +   ++ + E+ A P C +E+MV  N Y EF+TET++EFE++DF+   +++PSNTF +L
Subjt:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL

Query:  DSNVLDNTTEHDPI
        D N +D   EHDPI
Subjt:  DSNVLDNTTEHDPI

A0A5A7V456 Uncharacterized protein2.2e-1546.23Show/hide
Query:  MSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATPC-DDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNELDSNVLDNT
        M IPN+VHLYVNV RM +++ ++   +  L     V + PD E VA+   DDE+MV +N Y +F+TET++EFE+ DF+ R H++PSNT  +++ +V+D+ 
Subjt:  MSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATPC-DDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNELDSNVLDNT

Query:  TEHDPI
         EHDPI
Subjt:  TEHDPI

A0A5A7VAN3 Uncharacterized protein8.2e-1545.28Show/hide
Query:  MSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVAT-PCDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNELDSNVLDNT
        MSIPN+VHLYVNV R+ +++ ++   +  L     V + PD E VA+   +DE+MV +N Y +F+TETN++FE+ DF+   H++PSNT  ++D +V+D+ 
Subjt:  MSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVAT-PCDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNELDSNVLDNT

Query:  TEHDPI
         EHDPI
Subjt:  TEHDPI

A0A5D3DHR2 GATA zinc finger domain-containing protein 10-like isoform X26.3e-1543.86Show/hide
Query:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL
        MN MFSIA+  PN+VHLYV V  +D+ + +     ++ P  +   ++ D E+ A P C +E+MV  N Y EF+TET++EFE++DF+   +++PSNTF +L
Subjt:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL

Query:  DSNVLDNTTEHDPI
        D N +D+  E DPI
Subjt:  DSNVLDNTTEHDPI

A0A5D3DKL9 Uncharacterized protein4.8e-1543.86Show/hide
Query:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL
        MN MFSIA+  PN+VHLYV V  +D+ + +     ++ P  +   ++ D E+ A P C +E+MV  N Y EF+TETN+E E++D +   +++PSNTF +L
Subjt:  MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATP-CDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNEL

Query:  DSNVLDNTTEHDPI
        D N +D   EHDPI
Subjt:  DSNVLDNTTEHDPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAAATTTAGTACATTTATATGTTAATGTAAGAAGGATGGATGTGAATGTACAAATCTCCAGAAACACCTATTCAAT
CTTACCTGTGATGATGGTCGTCACACTTAACCCCGATCTTGAAACAGTTGCTACACCATGTGATGATGAAGATATGGTGGTAGATAATACATATAAAGAGTTTAAAACTG
AAACAAATAATGAATTTGAAAAGTTGGACTTTGAGGATAGGGTACATGATATCCCTTCAAACACATTTAATGAGTTGGATAGCAATGTATTAGATAACACTACCGAACAT
GATCCTATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAAATTTAGTACATTTATATGTTAATGTAAGAAGGATGGATGTGAATGTACAAATCTCCAGAAACACCTATTCAAT
CTTACCTGTGATGATGGTCGTCACACTTAACCCCGATCTTGAAACAGTTGCTACACCATGTGATGATGAAGATATGGTGGTAGATAATACATATAAAGAGTTTAAAACTG
AAACAAATAATGAATTTGAAAAGTTGGACTTTGAGGATAGGGTACATGATATCCCTTCAAACACATTTAATGAGTTGGATAGCAATGTATTAGATAACACTACCGAACAT
GATCCTATCTAA
Protein sequenceShow/hide protein sequence
MNLMFSIAMSIPNLVHLYVNVRRMDVNVQISRNTYSILPVMMVVTLNPDLETVATPCDDEDMVVDNTYKEFKTETNNEFEKLDFEDRVHDIPSNTFNELDSNVLDNTTEH
DPI