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Tan0019613 (gene) of Snake gourd v1 genome

Gene IDTan0019613
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTranscription factor UPBEAT1-like
Genome locationLG04:54679827..54680337
RNA-Seq ExpressionTan0019613
SyntenyTan0019613
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056655.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]1.4e-2969.09Show/hide
Query:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYG
        MS I KKH I WKQSTRRTV+ SR     +R  R H+NGG AC+SD+SAKLE+LQSLIP+R+D +G  RRAE+LF++TADYIVLLK+QVFVLQRLIEFYG
Subjt:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYG

Query:  SGERENSVTS
        S +REN+V+S
Subjt:  SGERENSVTS

KAG6607102.1 hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4187.13Show/hide
Query:  ISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSGERENSVT
        +SWKQSTRR V+RSRYGSRILRARRIHKNGGKACSSDVSA+LEALQSLIPT+N+G+GH RR+EELFQETADYIVLLKNQVFVLQRLIEFYGS EREN+V+
Subjt:  ISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSGERENSVT

Query:  S
        +
Subjt:  S

KAG7036793.1 hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-3681.19Show/hide
Query:  ISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSGERENSVT
        +SWKQSTRR V+RSRYGSRILRARRIHKNGGKACSSDVSA+LEALQSLIPT+N+G+GH RR+EELFQETADYI      VFVLQRLIEFYGS EREN+V+
Subjt:  ISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSGERENSVT

Query:  S
        +
Subjt:  S

PQQ13412.1 uncharacterized protein Pyn_32000 [Prunus yedoensis var. nudiflora]1.3e-1455.34Show/hide
Query:  KHGISWKQSTRRTVMRSRYGSRILRA-RRIHKNGG---KACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSG
        K  ++ ++ TRRT  R R GSR   A RR   NGG   K  S  VSAKLE L+SLI   + GK    +AEELFQETADYIVLL+ QV +LQRL+E YGS 
Subjt:  KHGISWKQSTRRTVMRSRYGSRILRA-RRIHKNGG---KACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSG

Query:  ERE
        E+E
Subjt:  ERE

TYK04615.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]3.7e-3070Show/hide
Query:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYG
        MSSI KKH I WKQSTRRTV+ SR     +R  R H+NGG AC+SD+SAKLE+LQSLIP+R+D +G  RRAE+LF++TADYIVLLK+QVFVLQRLIEFYG
Subjt:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYG

Query:  SGERENSVTS
        S +REN+V+S
Subjt:  SGERENSVTS

TrEMBL top hitse value%identityAlignment
A0A067JTG6 Uncharacterized protein1.4e-1455.34Show/hide
Query:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKAC--SSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEF
        MSS++K   IS  ++ RR    S    R  +A+R   NGG+ C   S VS KLEAL++LIP  N   G   +AE+LFQETADYIVLL+ QVFVLQRLIEF
Subjt:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKAC--SSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEF

Query:  YGS
        YGS
Subjt:  YGS

A0A314YX88 Uncharacterized protein6.1e-1555.34Show/hide
Query:  KHGISWKQSTRRTVMRSRYGSRILRA-RRIHKNGG---KACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSG
        K  ++ ++ TRRT  R R GSR   A RR   NGG   K  S  VSAKLE L+SLI   + GK    +AEELFQETADYIVLL+ QV +LQRL+E YGS 
Subjt:  KHGISWKQSTRRTVMRSRYGSRILRA-RRIHKNGG---KACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSG

Query:  ERE
        E+E
Subjt:  ERE

A0A5A7UT08 Transcription factor UPBEAT1-like6.8e-3069.09Show/hide
Query:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYG
        MS I KKH I WKQSTRRTV+ SR     +R  R H+NGG AC+SD+SAKLE+LQSLIP+R+D +G  RRAE+LF++TADYIVLLK+QVFVLQRLIEFYG
Subjt:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYG

Query:  SGERENSVTS
        S +REN+V+S
Subjt:  SGERENSVTS

A0A5D3BZU8 Transcription factor UPBEAT1-like1.8e-3070Show/hide
Query:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYG
        MSSI KKH I WKQSTRRTV+ SR     +R  R H+NGG AC+SD+SAKLE+LQSLIP+R+D +G  RRAE+LF++TADYIVLLK+QVFVLQRLIEFYG
Subjt:  MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYG

Query:  SGERENSVTS
        S +REN+V+S
Subjt:  SGERENSVTS

A0A6J5UGL2 Uncharacterized protein1.4e-1453.85Show/hide
Query:  KHGISWKQSTRRTVMRSRYGSRILRA-RRIHKNGG---KACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSG
        K  ++ ++ TRR   R R GSR   A RR   NGG   K  S  VSAKLE L+SLI   + GK    +A+ELFQETADYIVLL+ QV +LQRL+E YGS 
Subjt:  KHGISWKQSTRRTVMRSRYGSRILRA-RRIHKNGG---KACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSG

Query:  EREN
        E+EN
Subjt:  EREN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29370.1 unknown protein2.7e-0744.32Show/hide
Query:  KQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTR-NDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFY
        K  T R   R+   SR         NG       V  KL AL+SL+P   N G G     EELFQETA+YIV L+ QV VL++LIE Y
Subjt:  KQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTR-NDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFY

AT5G39240.1 unknown protein2.5e-0839.58Show/hide
Query:  RSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRR------------AEELFQETADYIVLLKNQVFVLQRLIEFYGSGERE
        RSR G R  +     +  G       S KL+AL+SL+P  +      R+             E+LFQETADYIV L+ QV VLQ+LIE YGS +++
Subjt:  RSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRR------------AEELFQETADYIVLLKNQVFVLQRLIEFYGSGERE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGATTACAAAGAAACACGGAATATCATGGAAGCAATCGACGAGAAGAACGGTTATGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAATCCACAA
AAATGGCGGAAAAGCGTGCTCCTCAGACGTATCGGCGAAGCTTGAGGCGCTGCAGAGCCTCATTCCGACTCGGAACGACGGCAAAGGACATCAACGGAGAGCGGAGGAGT
TGTTTCAGGAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGGTGAGAGAGAAAATTCCGTAACATCG
TAG
mRNA sequenceShow/hide mRNA sequence
GTCGTTTTAACTTCTCTTTCGTCGATTCCTCTTTCTTTCTCCCTCTAAAACTGGCGCATAGAATGAGTTCGATTACAAAGAAACACGGAATATCATGGAAGCAATCGACG
AGAAGAACGGTTATGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAATCCACAAAAATGGCGGAAAAGCGTGCTCCTCAGACGTATCGGCGAAGCTTGAGGC
GCTGCAGAGCCTCATTCCGACTCGGAACGACGGCAAAGGACATCAACGGAGAGCGGAGGAGTTGTTTCAGGAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGT
TCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGGTGAGAGAGAAAATTCCGTAACATCGTAGTTTAATTCTTCTCGAATCAAGGAAAAGGAAATTGAGAAGAGGAGA
CGGTCGGAATGATCGATAATTTTCTGGAATTTTCGTTTTGCATGCGGTGTCTGGTTGGAGAGAAAGTGGAG
Protein sequenceShow/hide protein sequence
MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSGERENSVTS