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Tan0019622 (gene) of Snake gourd v1 genome

Gene IDTan0019622
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionNuclear transcription factor Y protein
Genome locationLG06:79030804..79031438
RNA-Seq ExpressionTan0019622
SyntenyTan0019622
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KDO75175.1 hypothetical protein CISIN_1g044287mg [Citrus sinensis]1.3e-3864.89Show/hide
Query:  EFNFNKMVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALG
        +F  +KMV++  A  +   ++DGG +KE E LLPIANVGR+MKQILPANAK+SKEAKETMQEC +EFI F+T EASEKCRKE R+TV GDD+CWAL  LG
Subjt:  EFNFNKMVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALG

Query:  FDDFAGALRRYLHKYRELEEDDHQKGNRDEK
        FDD+AG +RRYLHKYRELE    ++ N+ +K
Subjt:  FDDFAGALRRYLHKYRELEEDDHQKGNRDEK

RHN73237.1 putative transcription factor Hap3/NF-YB family [Medicago truncatula]7.5e-3966.67Show/hide
Query:  FNKMVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDD
        + KMV++F   SS    ND G +KE + LLPIANVGR+MKQILP NAKVSKEAKETMQEC +EFI FVT EASEKCRKE R+TV GDD+CWAL  LGFDD
Subjt:  FNKMVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDD

Query:  FAGALRRYLHKYRELEEDDHQKGNRD
        +A  +RRYLH+YRELE D     N++
Subjt:  FAGALRRYLHKYRELEEDDHQKGNRD

XP_006598369.1 nuclear transcription factor Y subunit B-5 [Glycine max]1.3e-3867.74Show/hide
Query:  VEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGA
        +ED    SS   NN+GG +KE + LLPIANVGRLMK+ILP NAK+SKEAKETMQEC +EFI FVT EASEKCRKE R+TV GDD+CWAL  LGFD++A  
Subjt:  VEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGA

Query:  LRRYLHKYRELEEDDHQKGNRDEK
        +RRYLH+YRE+E  DH K N  EK
Subjt:  LRRYLHKYRELEEDDHQKGNRDEK

XP_010037376.1 nuclear transcription factor Y subunit B-5 [Eucalyptus grandis]4.4e-3973.68Show/hide
Query:  IGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRE
        IG+ND GS+KE + LLPIANVGR+MKQILP NAK+SKEAKETMQEC +EFIGFVTGEASEKCRKE R+TV GDD+CWA+E LGFD++AG LRRYLH+YR+
Subjt:  IGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRE

Query:  LEEDDHQKGNRDEK
        LE D   K N+D +
Subjt:  LEEDDHQKGNRDEK

XP_022138615.1 nuclear transcription factor Y subunit B-7-like [Momordica charantia]7.7e-4479.2Show/hide
Query:  MVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAG
        M  D  AD+SEI  N GG +KEPENLLPIANVGRLMKQILPANAK+SKEAKETMQECA+EFIGFVTGEASEKCR++ RRTVTGDDLC ALE+LGFDDFAG
Subjt:  MVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAG

Query:  ALRRYLHKYRELEEDDHQKGNRDEK
         LRRYL KYRE EED+ QK N+ E+
Subjt:  ALRRYLHKYRELEEDDHQKGNRDEK

TrEMBL top hitse value%identityAlignment
A0A059D1M2 CBFD_NFYB_HMF domain-containing protein2.1e-3973.68Show/hide
Query:  IGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRE
        IG+ND GS+KE + LLPIANVGR+MKQILP NAK+SKEAKETMQEC +EFIGFVTGEASEKCRKE R+TV GDD+CWA+E LGFD++AG LRRYLH+YR+
Subjt:  IGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRE

Query:  LEEDDHQKGNRDEK
        LE D   K N+D +
Subjt:  LEEDDHQKGNRDEK

A0A0B2QKX1 Nuclear transcription factor Y subunit B-56.2e-3967.74Show/hide
Query:  VEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGA
        +ED    SS   NN+GG +KE + LLPIANVGRLMK+ILP NAK+SKEAKETMQEC +EFI FVT EASEKCRKE R+TV GDD+CWAL  LGFD++A  
Subjt:  VEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGA

Query:  LRRYLHKYRELEEDDHQKGNRDEK
        +RRYLH+YRE+E  DH K N  EK
Subjt:  LRRYLHKYRELEEDDHQKGNRDEK

A0A0R0G186 CBFD_NFYB_HMF domain-containing protein6.2e-3967.74Show/hide
Query:  VEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGA
        +ED    SS   NN+GG +KE + LLPIANVGRLMK+ILP NAK+SKEAKETMQEC +EFI FVT EASEKCRKE R+TV GDD+CWAL  LGFD++A  
Subjt:  VEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGA

Query:  LRRYLHKYRELEEDDHQKGNRDEK
        +RRYLH+YRE+E  DH K N  EK
Subjt:  LRRYLHKYRELEEDDHQKGNRDEK

A0A396JDK3 Putative transcription factor Hap3/NF-YB family3.6e-3966.67Show/hide
Query:  FNKMVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDD
        + KMV++F   SS    ND G +KE + LLPIANVGR+MKQILP NAKVSKEAKETMQEC +EFI FVT EASEKCRKE R+TV GDD+CWAL  LGFDD
Subjt:  FNKMVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDD

Query:  FAGALRRYLHKYRELEEDDHQKGNRD
        +A  +RRYLH+YRELE D     N++
Subjt:  FAGALRRYLHKYRELEEDDHQKGNRD

A0A6J1C9Y3 nuclear transcription factor Y subunit B-7-like3.7e-4479.2Show/hide
Query:  MVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAG
        M  D  AD+SEI  N GG +KEPENLLPIANVGRLMKQILPANAK+SKEAKETMQECA+EFIGFVTGEASEKCR++ RRTVTGDDLC ALE+LGFDDFAG
Subjt:  MVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAG

Query:  ALRRYLHKYRELEEDDHQKGNRDEK
         LRRYL KYRE EED+ QK N+ E+
Subjt:  ALRRYLHKYRELEEDDHQKGNRDEK

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-42.2e-3366.35Show/hide
Query:  EPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELEED--DHQK
        + + LLPIANVGRLMKQILP+NAK+SKEAK+T+QECATEFI FVT EASEKC +E R+TV GDD+ WAL  LG D++A A+ R+LHKYRE E +  +H K
Subjt:  EPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELEED--DHQK

Query:  GNRD
        G+ D
Subjt:  GNRD

O23310 Nuclear transcription factor Y subunit B-32.0e-3157.8Show/hide
Query:  ADSSEIGNNDGG--SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRR
        +D+   G+ DGG  S +E +  LPIANV R+MK+ LPANAK+SK+AKET+QEC +EFI F+TGEAS+KC++E R+T+ GDDL WA+  LGF+D+   L+ 
Subjt:  ADSSEIGNNDGG--SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRR

Query:  YLHKYRELE
        YL KYRE+E
Subjt:  YLHKYRELE

O82248 Nuclear transcription factor Y subunit B-51.4e-3570.19Show/hide
Query:  VKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELE---EDD
        VKE + LLPIANVGR+MK ILPANAKVSKEAKETMQEC +EFI FVTGEAS+KC KE R+TV GDD+CWA+  LGFDD+A  L++YLH+YR LE    + 
Subjt:  VKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELE---EDD

Query:  HQKG
        H KG
Subjt:  HQKG

Q69J40 Nuclear transcription factor Y subunit B-101.0e-3056.36Show/hide
Query:  ADSSEIGNNDGG---SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALR
        +D+   G ++ G   S +E +  LPIANV R+MK+ LPANAK+SK+AKET+QEC +EFI F+TGEAS+KC++E R+T+ GDDL WA+  LGF+D+   L+
Subjt:  ADSSEIGNNDGG---SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALR

Query:  RYLHKYRELE
         YLHK+RELE
Subjt:  RYLHKYRELE

Q75IZ7 Nuclear transcription factor Y subunit B-87.8e-3157.8Show/hide
Query:  DSSEIGNNDGG---SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRR
        DS    N  GG   S +E +  LPIANV R+MK+ LPANAK+SK+AKET+QEC +EFI F+TGEAS+KC++E R+T+ GDDL WA+  LGF+D+   L+ 
Subjt:  DSSEIGNNDGG---SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRR

Query:  YLHKYRELE
        YLHK+RE+E
Subjt:  YLHKYRELE

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B41.6e-3466.35Show/hide
Query:  EPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELEED--DHQK
        + + LLPIANVGRLMKQILP+NAK+SKEAK+T+QECATEFI FVT EASEKC +E R+TV GDD+ WAL  LG D++A A+ R+LHKYRE E +  +H K
Subjt:  EPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELEED--DHQK

Query:  GNRD
        G+ D
Subjt:  GNRD

AT2G13570.1 nuclear factor Y, subunit B72.7e-3158Show/hide
Query:  NNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELE
        NN+  + KE +  LPIANVGR+MK++LP N K+SK+AKET+QEC +EFI FVTGEAS+KC++E R+T+ GDD+ WA+  LGF+D+   L+ YL KYR+ E
Subjt:  NNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELE

AT2G47810.1 nuclear factor Y, subunit B59.7e-3770.19Show/hide
Query:  VKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELE---EDD
        VKE + LLPIANVGR+MK ILPANAKVSKEAKETMQEC +EFI FVTGEAS+KC KE R+TV GDD+CWA+  LGFDD+A  L++YLH+YR LE    + 
Subjt:  VKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELE---EDD

Query:  HQKG
        H KG
Subjt:  HQKG

AT4G14540.1 nuclear factor Y, subunit B31.5e-3257.8Show/hide
Query:  ADSSEIGNNDGG--SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRR
        +D+   G+ DGG  S +E +  LPIANV R+MK+ LPANAK+SK+AKET+QEC +EFI F+TGEAS+KC++E R+T+ GDDL WA+  LGF+D+   L+ 
Subjt:  ADSSEIGNNDGG--SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRR

Query:  YLHKYRELE
        YL KYRE+E
Subjt:  YLHKYRELE

AT5G47640.1 nuclear factor Y, subunit B29.4e-3260Show/hide
Query:  GNNDGG----SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHK
        GNN  G    S +E +  LPIANV R+MK+ LPANAK+SK+AKETMQEC +EFI FVTGEAS+KC+KE R+T+ GDDL WA+  LGF+D+   L+ YL +
Subjt:  GNNDGG----SVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHK

Query:  YRELE
        +RE+E
Subjt:  YRELE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCAAAATTTGGGCTCAAACATTCCACTGAACGAGTTCAATTTCAACAAAATGGTGGAGGATTTTGCTGCAGATTCTTCAGAGATCGGCAACAATGACGGCGGATC
CGTCAAGGAGCCGGAAAATCTGCTGCCGATCGCCAACGTCGGTCGATTAATGAAGCAGATTCTGCCGGCGAATGCGAAGGTTTCGAAGGAAGCGAAAGAGACAATGCAGG
AATGCGCGACTGAGTTCATCGGTTTTGTCACCGGTGAGGCGTCGGAGAAATGCCGAAAGGAAGGCCGCCGGACGGTCACCGGCGACGACCTGTGTTGGGCTCTGGAAGCC
CTAGGATTCGACGATTTCGCCGGAGCGTTGAGAAGGTACCTTCATAAGTACCGGGAGCTGGAAGAAGACGATCATCAGAAAGGCAACCGTGATGAGAAGATAAAATAA
mRNA sequenceShow/hide mRNA sequence
CAAACAATTAAAAAAAAAAGCAAAAATTACAAACAAATTGGATGGAATCTTCCCATCAGCAATCCTTCCAATTCTTCTATAAACAAACCTGTTTACAAACTCGCATCTTC
CACTGCAGATGGACCAAAATTTGGGCTCAAACATTCCACTGAACGAGTTCAATTTCAACAAAATGGTGGAGGATTTTGCTGCAGATTCTTCAGAGATCGGCAACAATGAC
GGCGGATCCGTCAAGGAGCCGGAAAATCTGCTGCCGATCGCCAACGTCGGTCGATTAATGAAGCAGATTCTGCCGGCGAATGCGAAGGTTTCGAAGGAAGCGAAAGAGAC
AATGCAGGAATGCGCGACTGAGTTCATCGGTTTTGTCACCGGTGAGGCGTCGGAGAAATGCCGAAAGGAAGGCCGCCGGACGGTCACCGGCGACGACCTGTGTTGGGCTC
TGGAAGCCCTAGGATTCGACGATTTCGCCGGAGCGTTGAGAAGGTACCTTCATAAGTACCGGGAGCTGGAAGAAGACGATCATCAGAAAGGCAACCGTGATGAGAAGATA
AAATAAATCTGAAGAACGACGCCGTTTACGGTGAGGAATTGATTTCAAAACGACGGTGTTTTGTAGTACGGATAATCGGTAATTA
Protein sequenceShow/hide protein sequence
MDQNLGSNIPLNEFNFNKMVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEA
LGFDDFAGALRRYLHKYRELEEDDHQKGNRDEKIK