| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 8.8e-258 | 55.03 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
M++SI+ LL S++L +N++ WKSNLNTILVVDDLRF+LTEECPQ PA NA ++V+EAYDRW+KANDKA+VYILAS+++VL KKH+ + +A+ IM SL++
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
MFGQ S +RHE++K+IY RMKEG+ VREHVLD+M+HFN+AE+NG ID+ NA +NKIE+NLTTLLNELQ FQ+L +KG
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
Query: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
+ + EAN+ V R+F +GSSS K G K Q KK GKGKAP K K K DKGKCFHCN DGHWKRNCPKYLAE K +K
Subjt: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Query: ----------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-----------------------------------------
ATNH+C S +ETSS+K+L+EGE+TL+VGTG+VVSA AVGD L
Subjt: ----------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-----------------------------------------
Query: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
LGHINLNRIERL K+G+LN+LED SLPPCESCLEGKMTKR F
Subjt: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
Query: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
TGKG RA PLELVHSDLCGP+NVKAR GYEYFISFIDD+SRYG++ +FK YK EVEN +GKTIKTLRSDRGGEYMD +FQDY+IE GI+
Subjt: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
Query: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
SQLS P+TP QNGVSERRNRTLLDM ++ +G L HV V NPKKLEPRS+L
Subjt: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
Query: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRY
C FVGYPKE+RGGLFY PQENKV VSTN TFLEEDH RNH+P SK+VL E T D+ S++V + AN S QS SQ L +PRRSGRVV QPNRY
Subjt: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRY
Query: LGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEE
LGL ETQ++IPDD VEDPL+YKQ M+DVD+DQWIKAM+LEMESM FNSVW LVD P V+PIGCKWIYKRKRD AGKVQT+KARLVAKG+TQ+E VDYEE
Subjt: LGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEE
Query: TFFPVAMLKSIRILLSIAAFYDYEI
TF PVAMLKSIRILLSIA FY+YEI
Subjt: TFFPVAMLKSIRILLSIAAFYDYEI
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| KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-250 | 53.5 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
M+S+ + +L +D+L N+ +WK+ +NT+L++DDLRF+L EECPQVPA NA ++V+E Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM SLQ+
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
MFGQ S QI+H++LKYIYN+RM EG+ VREHVL++MVHFNVAEMNGAVID+ NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
Query: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Q GEAN+ +R+F +GS+SGTKS S SG KK +KKK G KA A K KG CFHCN +GHWKRNCPKYLAE K+ K
Subjt: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Query: --------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-------------------------------------------
ATNHVCSS + SS+++LE GEMT+RVGTG VVSA AVG +L
Subjt: --------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-------------------------------------------
Query: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
LGHINLNRIERL KNGLL++LE+ SLP CESCLEGKMTKR F
Subjt: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
Query: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
TGKG+RA EPLELVHSDLCGP+NVKAR G+EYFI+F DDYSRYGY+ +FK YK EVENAL KTIKT RSDRGGEYMDL+FQ+Y++E GI
Subjt: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
Query: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
SQLS P TP QNGVSERRNRTLLDM ++ +G ++ HV +NPKKLEPRS+L
Subjt: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
Query: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----EGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQ
C FVGYPK TRGG FYDP++NKV VSTN TFLEEDH+R HKP SK+VLN E T+ TRVV++ +RV +S+++ QSL PRRSGRV
Subjt: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----EGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQ
Query: PNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEV
P RY+ L ET VI D D+EDPL++K+ M DVDKD+WIKAM+LE+ESM FNSVW+LVDQP+GV+PIGCKWIYKRKR A GKVQT+KARLVAKG+TQ E V
Subjt: PNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEV
Query: DYEETFFPVAMLKSIRILLSIAAFYDYEI
DYEETF PVAMLKSIRILLSIAA++DYEI
Subjt: DYEETFFPVAMLKSIRILLSIAAFYDYEI
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| KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa] | 4.0e-258 | 64.1 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
MSSSIIALLK D+LT EN+ TWKS LN ILV+ DL F+L EECP P ++A QSV++AYDRW KANDKA+++ILAS+S++L KKHE MV+AR+IM SL++
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDDNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLCVHSRRFQKGSS
MFGQ S QI+ E+ NVA HS+R
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDDNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLCVHSRRFQKGSS
Query: SGTKSCGSFSGLKKTQKKKIGGKGKAPA-ADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK-ATNHVCSSLRETSSFKELEEGEMTLRVGTG
+ S SG +K QK+K GKGK P A + KGK KV K KCFHCNVD HWK NCPKYL + KEK+ ATNHVCSSL+ETSSFK+LE+ EMTL+VGTG
Subjt: SGTKSCGSFSGLKKTQKKKIGGKGKAPA-ADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK-ATNHVCSSLRETSSFKELEEGEMTLRVGTG
Query: DVVSARAVGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGY
DV+SARAVGDAK LGHINL+RI RL KNGLLNKL+DVSLPPCESCLEGKMTKR FTGKGYRA EPLEL+HSDLCGP+NVKAR G+EYFISFIDDYSRYGY
Subjt: DVVSARAVGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGY
Query: L-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTL---------------E
L +FK YK EVEN L K IK LRSDRGGEYMDLRFQDYMIEHGI+SQLS P TP QNGVSERRNRTLLDM ++ E
Subjt: L-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTL---------------E
Query: FGVVL---------------------------------RHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSK
V + HV V+NPKKLEPRSRLCQFVGYPKETRGGLF+DPQEN+V VSTN TFLEEDHMRNHKP SK
Subjt: FGVVL---------------------------------RHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSK
Query: LVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMD
LVL+E TDE TRVVD+ GPSSRVDE TS QS PSQSL MPRRSGRVV QPNRYLGL ETQVVIPDD VEDPLSYKQ M+DVDKDQW+KAMDLEMESM
Subjt: LVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMD
Query: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
FNSVWELVD PEGV+PIGCKWIYKRKRD+AGKVQT+KARLVAKG+TQRE VDYEETF PVAMLKSIRILLSIA FYDYEI
Subjt: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
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| TYK02840.1 gag/pol protein [Cucumis melo var. makuwa] | 4.0e-258 | 64.1 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
MSSSIIALLK D+LT EN+ TWKS LN ILV+ DL F+L EECP P ++A QSV++AYDRW KANDKA+++ILAS+S++L KKHE MV+AR+IM SL++
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDDNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLCVHSRRFQKGSS
MFGQ S QI+ E+ NVA HS+R
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDDNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLCVHSRRFQKGSS
Query: SGTKSCGSFSGLKKTQKKKIGGKGKAPA-ADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK-ATNHVCSSLRETSSFKELEEGEMTLRVGTG
+ S SG +K QK+K GKGK P A + KGK KV K KCFHCNVD HWK NCPKYL + KEK+ ATNHVCSSL+ETSSFK+LE+ EMTL+VGTG
Subjt: SGTKSCGSFSGLKKTQKKKIGGKGKAPA-ADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK-ATNHVCSSLRETSSFKELEEGEMTLRVGTG
Query: DVVSARAVGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGY
DV+SARAVGDAK LGHINL+RI RL KNGLLNKL+DVSLPPCESCLEGKMTKR FTGKGYRA EPLEL+HSDLCGP+NVKAR G+EYFISFIDDYSRYGY
Subjt: DVVSARAVGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGY
Query: L-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTL---------------E
L +FK YK EVEN L K IK LRSDRGGEYMDLRFQDYMIEHGI+SQLS P TP QNGVSERRNRTLLDM ++ E
Subjt: L-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTL---------------E
Query: FGVVL---------------------------------RHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSK
V + HV V+NPKKLEPRSRLCQFVGYPKETRGGLF+DPQEN+V VSTN TFLEEDHMRNHKP SK
Subjt: FGVVL---------------------------------RHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSK
Query: LVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMD
LVL+E TDE TRVVD+ GPSSRVDE TS QS PSQSL MPRRSGRVV QPNRYLGL ETQVVIPDD VEDPLSYKQ M+DVDKDQW+KAMDLEMESM
Subjt: LVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMD
Query: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
FNSVWELVD PEGV+PIGCKWIYKRKRD+AGKVQT+KARLVAKG+TQRE VDYEETF PVAMLKSIRILLSIA FYDYEI
Subjt: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
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| TYK14550.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-250 | 53.5 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
M+S+ + +L +D+L N+ +WK+ +NT+L++DDLRF+L EECPQVPA NA ++V+E Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM SLQ+
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
MFGQ S QI+H++LKYIYN+RM EG+ VREHVL++MVHFNVAEMNGAVID+ NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
Query: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Q GEAN+ +R+F +GS+SGTKS S SG KK +KKK G KA A K KG CFHCN +GHWKRNCPKYLAE K+ K
Subjt: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Query: --------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-------------------------------------------
ATNHVCSS + SS+++LE GEMT+RVGTG VVSA AVG +L
Subjt: --------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-------------------------------------------
Query: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
LGHINLNRIERL KNGLL++LE+ SLP CESCLEGKMTKR F
Subjt: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
Query: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
TGKG+RA EPLELVHSDLCGP+NVKAR G+EYFI+F DDYSRYGY+ +FK YK EVENAL KTIKT RSDRGGEYMDL+FQ+Y++E GI
Subjt: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
Query: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
SQLS P TP QNGVSERRNRTLLDM ++ +G ++ HV +NPKKLEPRS+L
Subjt: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
Query: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----EGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQ
C FVGYPK TRGG FYDP++NKV VSTN TFLEEDH+R HKP SK+VLN E T+ TRVV++ +RV +S+++ QSL PRRSGRV
Subjt: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----EGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQ
Query: PNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEV
P RY+ L ET VI D D+EDPL++K+ M DVDKD+WIKAM+LE+ESM FNSVW+LVDQP+GV+PIGCKWIYKRKR A GKVQT+KARLVAKG+TQ E V
Subjt: PNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEV
Query: DYEETFFPVAMLKSIRILLSIAAFYDYEI
DYEETF PVAMLKSIRILLSIAA++DYEI
Subjt: DYEETFFPVAMLKSIRILLSIAAFYDYEI
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A5A7SMH8 Gag/pol protein | 6.6e-251 | 53.5 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
M+S+ + +L +D+L N+ +WK+ +NT+L++DDLRF+L EECPQVPA NA ++V+E Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM SLQ+
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
MFGQ S QI+H++LKYIYN+RM EG+ VREHVL++MVHFNVAEMNGAVID+ NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
Query: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Q GEAN+ +R+F +GS+SGTKS S SG KK +KKK G KA A K KG CFHCN +GHWKRNCPKYLAE K+ K
Subjt: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Query: --------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-------------------------------------------
ATNHVCSS + SS+++LE GEMT+RVGTG VVSA AVG +L
Subjt: --------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-------------------------------------------
Query: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
LGHINLNRIERL KNGLL++LE+ SLP CESCLEGKMTKR F
Subjt: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
Query: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
TGKG+RA EPLELVHSDLCGP+NVKAR G+EYFI+F DDYSRYGY+ +FK YK EVENAL KTIKT RSDRGGEYMDL+FQ+Y++E GI
Subjt: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
Query: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
SQLS P TP QNGVSERRNRTLLDM ++ +G ++ HV +NPKKLEPRS+L
Subjt: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
Query: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----EGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQ
C FVGYPK TRGG FYDP++NKV VSTN TFLEEDH+R HKP SK+VLN E T+ TRVV++ +RV +S+++ QSL PRRSGRV
Subjt: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----EGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQ
Query: PNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEV
P RY+ L ET VI D D+EDPL++K+ M DVDKD+WIKAM+LE+ESM FNSVW+LVDQP+GV+PIGCKWIYKRKR A GKVQT+KARLVAKG+TQ E V
Subjt: PNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEV
Query: DYEETFFPVAMLKSIRILLSIAAFYDYEI
DYEETF PVAMLKSIRILLSIAA++DYEI
Subjt: DYEETFFPVAMLKSIRILLSIAAFYDYEI
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| A0A5A7UYE8 Gag/pol protein | 1.9e-258 | 64.1 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
MSSSIIALLK D+LT EN+ TWKS LN ILV+ DL F+L EECP P ++A QSV++AYDRW KANDKA+++ILAS+S++L KKHE MV+AR+IM SL++
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDDNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLCVHSRRFQKGSS
MFGQ S QI+ E+ NVA HS+R
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDDNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLCVHSRRFQKGSS
Query: SGTKSCGSFSGLKKTQKKKIGGKGKAPA-ADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK-ATNHVCSSLRETSSFKELEEGEMTLRVGTG
+ S SG +K QK+K GKGK P A + KGK KV K KCFHCNVD HWK NCPKYL + KEK+ ATNHVCSSL+ETSSFK+LE+ EMTL+VGTG
Subjt: SGTKSCGSFSGLKKTQKKKIGGKGKAPA-ADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK-ATNHVCSSLRETSSFKELEEGEMTLRVGTG
Query: DVVSARAVGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGY
DV+SARAVGDAK LGHINL+RI RL KNGLLNKL+DVSLPPCESCLEGKMTKR FTGKGYRA EPLEL+HSDLCGP+NVKAR G+EYFISFIDDYSRYGY
Subjt: DVVSARAVGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGY
Query: L-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTL---------------E
L +FK YK EVEN L K IK LRSDRGGEYMDLRFQDYMIEHGI+SQLS P TP QNGVSERRNRTLLDM ++ E
Subjt: L-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTL---------------E
Query: FGVVL---------------------------------RHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSK
V + HV V+NPKKLEPRSRLCQFVGYPKETRGGLF+DPQEN+V VSTN TFLEEDHMRNHKP SK
Subjt: FGVVL---------------------------------RHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSK
Query: LVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMD
LVL+E TDE TRVVD+ GPSSRVDE TS QS PSQSL MPRRSGRVV QPNRYLGL ETQVVIPDD VEDPLSYKQ M+DVDKDQW+KAMDLEMESM
Subjt: LVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMD
Query: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
FNSVWELVD PEGV+PIGCKWIYKRKRD+AGKVQT+KARLVAKG+TQRE VDYEETF PVAMLKSIRILLSIA FYDYEI
Subjt: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
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| A0A5D3BUN8 Gag/pol protein | 1.9e-258 | 64.1 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
MSSSIIALLK D+LT EN+ TWKS LN ILV+ DL F+L EECP P ++A QSV++AYDRW KANDKA+++ILAS+S++L KKHE MV+AR+IM SL++
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDDNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLCVHSRRFQKGSS
MFGQ S QI+ E+ NVA HS+R
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDDNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLCVHSRRFQKGSS
Query: SGTKSCGSFSGLKKTQKKKIGGKGKAPA-ADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK-ATNHVCSSLRETSSFKELEEGEMTLRVGTG
+ S SG +K QK+K GKGK P A + KGK KV K KCFHCNVD HWK NCPKYL + KEK+ ATNHVCSSL+ETSSFK+LE+ EMTL+VGTG
Subjt: SGTKSCGSFSGLKKTQKKKIGGKGKAPA-ADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK-ATNHVCSSLRETSSFKELEEGEMTLRVGTG
Query: DVVSARAVGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGY
DV+SARAVGDAK LGHINL+RI RL KNGLLNKL+DVSLPPCESCLEGKMTKR FTGKGYRA EPLEL+HSDLCGP+NVKAR G+EYFISFIDDYSRYGY
Subjt: DVVSARAVGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGY
Query: L-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTL---------------E
L +FK YK EVEN L K IK LRSDRGGEYMDLRFQDYMIEHGI+SQLS P TP QNGVSERRNRTLLDM ++ E
Subjt: L-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTL---------------E
Query: FGVVL---------------------------------RHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSK
V + HV V+NPKKLEPRSRLCQFVGYPKETRGGLF+DPQEN+V VSTN TFLEEDHMRNHKP SK
Subjt: FGVVL---------------------------------RHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSK
Query: LVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMD
LVL+E TDE TRVVD+ GPSSRVDE TS QS PSQSL MPRRSGRVV QPNRYLGL ETQVVIPDD VEDPLSYKQ M+DVDKDQW+KAMDLEMESM
Subjt: LVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMD
Query: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
FNSVWELVD PEGV+PIGCKWIYKRKRD+AGKVQT+KARLVAKG+TQRE VDYEETF PVAMLKSIRILLSIA FYDYEI
Subjt: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
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| A0A5D3CPJ6 Gag/pol protein | 6.6e-251 | 53.5 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
M+S+ + +L +D+L N+ +WK+ +NT+L++DDLRF+L EECPQVPA NA ++V+E Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM SLQ+
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
MFGQ S QI+H++LKYIYN+RM EG+ VREHVL++MVHFNVAEMNGAVID+ NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
Query: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Q GEAN+ +R+F +GS+SGTKS S SG KK +KKK G KA A K KG CFHCN +GHWKRNCPKYLAE K+ K
Subjt: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Query: --------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-------------------------------------------
ATNHVCSS + SS+++LE GEMT+RVGTG VVSA AVG +L
Subjt: --------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-------------------------------------------
Query: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
LGHINLNRIERL KNGLL++LE+ SLP CESCLEGKMTKR F
Subjt: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
Query: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
TGKG+RA EPLELVHSDLCGP+NVKAR G+EYFI+F DDYSRYGY+ +FK YK EVENAL KTIKT RSDRGGEYMDL+FQ+Y++E GI
Subjt: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
Query: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
SQLS P TP QNGVSERRNRTLLDM ++ +G ++ HV +NPKKLEPRS+L
Subjt: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
Query: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----EGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQ
C FVGYPK TRGG FYDP++NKV VSTN TFLEEDH+R HKP SK+VLN E T+ TRVV++ +RV +S+++ QSL PRRSGRV
Subjt: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----EGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQ
Query: PNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEV
P RY+ L ET VI D D+EDPL++K+ M DVDKD+WIKAM+LE+ESM FNSVW+LVDQP+GV+PIGCKWIYKRKR A GKVQT+KARLVAKG+TQ E V
Subjt: PNRYLGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEV
Query: DYEETFFPVAMLKSIRILLSIAAFYDYEI
DYEETF PVAMLKSIRILLSIAA++DYEI
Subjt: DYEETFFPVAMLKSIRILLSIAAFYDYEI
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| E2GK51 Gag/pol protein (Fragment) | 4.3e-258 | 55.03 | Show/hide |
Query: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
M++SI+ LL S++L +N++ WKSNLNTILVVDDLRF+LTEECPQ PA NA ++V+EAYDRW+KANDKA+VYILAS+++VL KKH+ + +A+ IM SL++
Subjt: MSSSIIALLKSDRLTDENFTTWKSNLNTILVVDDLRFLLTEECPQVPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLDKKHEGMVSAREIMSSLQD
Query: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
MFGQ S +RHE++K+IY RMKEG+ VREHVLD+M+HFN+AE+NG ID+ NA +NKIE+NLTTLLNELQ FQ+L +KG
Subjt: MFGQTSGQIRHESLKYIYNSRMKEGSLVREHVLDLMVHFNVAEMNGAVIDD--------------------NAVMNKIEYNLTTLLNELQTFQSLMKNKG
Query: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
+ + EAN+ V R+F +GSSS K G K Q KK GKGKAP K K K DKGKCFHCN DGHWKRNCPKYLAE K +K
Subjt: QADGEANLCVHSRRFQKGSSSGTKSCGSFSGLKKTQKKKIGGKGKAPAADKGKGKVKVVDKGKCFHCNVDGHWKRNCPKYLAELKEKK------------
Query: ----------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-----------------------------------------
ATNH+C S +ETSS+K+L+EGE+TL+VGTG+VVSA AVGD L
Subjt: ----------------ATNHVCSSLRETSSFKELEEGEMTLRVGTGDVVSARAVGDAKL-----------------------------------------
Query: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
LGHINLNRIERL K+G+LN+LED SLPPCESCLEGKMTKR F
Subjt: ----------------------------------------------------------LGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLF
Query: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
TGKG RA PLELVHSDLCGP+NVKAR GYEYFISFIDD+SRYG++ +FK YK EVEN +GKTIKTLRSDRGGEYMD +FQDY+IE GI+
Subjt: TGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIK
Query: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
SQLS P+TP QNGVSERRNRTLLDM ++ +G L HV V NPKKLEPRS+L
Subjt: SQLSTPNTPHQNGVSERRNRTLLDMFTTLE---------FGVVLR---------------------------------------HVSVSNPKKLEPRSRL
Query: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRY
C FVGYPKE+RGGLFY PQENKV VSTN TFLEEDH RNH+P SK+VL E T D+ S++V + AN S QS SQ L +PRRSGRVV QPNRY
Subjt: CQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLNEGTDEPTRVVDQAGPSSRVDEGANTSSQSRPSQSLGMPRRSGRVVCQPNRY
Query: LGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEE
LGL ETQ++IPDD VEDPL+YKQ M+DVD+DQWIKAM+LEMESM FNSVW LVD P V+PIGCKWIYKRKRD AGKVQT+KARLVAKG+TQ+E VDYEE
Subjt: LGLAETQVVIPDDDVEDPLSYKQTMSDVDKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEE
Query: TFFPVAMLKSIRILLSIAAFYDYEI
TF PVAMLKSIRILLSIA FY+YEI
Subjt: TFFPVAMLKSIRILLSIAAFYDYEI
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 3.1e-27 | 23.62 | Show/hide |
Query: VGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTG-KGYRAIE-PLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYLEFKV
+ D KLL + R S LLN LE +S CE CL GK + F K I+ PL +VHSD+CGP+ + YF+ F+D ++ Y
Subjt: VGDAKLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTG-KGYRAIE-PLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYLEFKV
Query: YKVEV-----------ENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTLEFGV-----------------
YK +V E + L D G EY+ + + ++ GI L+ P+TP NGVSER RT+ + T+ G
Subjt: YKVEV-----------ENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTLEFGV-----------------
Query: -------------------------VLRHVSV----------SNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVS-------TN----------T
L+H+ V + K + +S FVGY E G +D K IV+ TN T
Subjt: -------------------------VLRHVSV----------SNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVS-------TN----------T
Query: TFL---EEDHMRNHKPHSKLVL-----NEGTD--------------------EPTRVVDQAGPSSRVD--------------------------------
FL +E +N S+ ++ NE + + +++ P+ +
Subjt: TFL---EEDHMRNHKPHSKLVL-----NEGTD--------------------EPTRVVDQAGPSSRVD--------------------------------
Query: -EGANTSSQSRPSQS------LGMP------------RRSGRVVCQPNRYLGLAE---TQVVIPDDDV--EDPLSYKQTMSDVDKDQWIKAMDLEMESMD
+G+ ++SR S++ +G+ RRS R+ +P + +VV+ + + P S+ + DK W +A++ E+ +
Subjt: -EGANTSSQSRPSQS------LGMP------------RRSGRVVCQPNRYLGLAE---TQVVIPDDDV--EDPLSYKQTMSDVDKDQWIKAMDLEMESMD
Query: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
N+ W + +PE + +W++ K + G YKARLVA+GFTQ+ ++DYEETF PVA + S R +LS+ Y+ ++
Subjt: FNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.8e-59 | 31.59 | Show/hide |
Query: KLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSR-----------YGY
K +GH++ ++ L+K L++ + ++ PC+ CL GK + F R + L+LV+SD+CGP+ +++ G +YF++FIDD SR +
Subjt: KLLGHINLNRIERLSKNGLLNKLEDVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSR-----------YGY
Query: LEFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLD--------------------------------
F+ + VE G+ +K LRSD GGEY F++Y HGI+ + + P TP NGV+ER NRT+++
Subjt: LEFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLD--------------------------------
Query: ----------MFTTLE--------FGV-VLRHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----
++T E FG HV KL+ +S C F+GY E G +DP + KVI S + F E +R S+ V N
Subjt: ----------MFTTLE--------FGV-VLRHVSVSNPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEEDHMRNHKPHSKLVLN----
Query: ----------------EGTDEPTRVVDQAG----PSSRVDEGANTSSQSRPSQSLGMP-RRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDV
TDE + +Q G ++DEG + P RRS R + RY T+ V+ DD +P S K+ +S
Subjt: ----------------EGTDEPTRVVDQAG----PSSRVDEGANTSSQSRPSQSLGMP-RRSGRVVCQPNRYLGLAETQVVIPDDDVEDPLSYKQTMSDV
Query: DKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
+K+Q +KAM EMES+ N ++LV+ P+G RP+ CKW++K K+D K+ YKARLV KGF Q++ +D++E F PV + SIR +LS+AA D E+
Subjt: DKDQWIKAMDLEMESMDFNSVWELVDQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIAAFYDYEI
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| Q12337 Transposon Ty2-GR1 Gag-Pol polyprotein | 1.0e-14 | 26.58 | Show/hide |
Query: KLLGHINLNRIERLSKNGLLNKLED-------VSLPPCESCLEGKMTKRLFTGKGYR-----AIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYG
++LGH N I++ K + L++ S C CL GK TK KG R + EP + +H+D+ GPV+ + YFISF D+ +R+
Subjt: KLLGHINLNRIERLSKNGLLNKLED-------VSLPPCESCLEGKMTKRLFTGKGYR-----AIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYG
Query: YL-------------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLD---------------MFT
++ F ++N + ++ DRG EY + + GI + +T +GV+ER NRTLL+ F+
Subjt: YL-------------EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLD---------------MFT
Query: TLEFGVVLRHVSVSNPKKLEPR
+EF ++R+ VS K+ R
Subjt: TLEFGVVLRHVSVSNPKKLEPR
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 8.3e-25 | 22.38 | Show/hide |
Query: CESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYM
C CL K K F+ + PLE ++SD+ + + + Y Y++ F+D ++RY +L F +K +EN I T SD GGE++
Subjt: CESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------EFKVYKVEVENALGKTIKTLRSDRGGEYM
Query: DLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTLEFGVVLRHVSVS---------------------------------------------
L +Y +HGI S P+TP NG+SER++R +++ TL L H S+
Subjt: DLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTLEFGVVLRHVSVS---------------------------------------------
Query: -----------NPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEE-----------DHMRNHKPHSKLVLNEGTDEPTRVVDQAGP---
N KL+ +SR C F+GY L Q +++ +S + F E ++ + S V + T PTR P
Subjt: -----------NPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLEE-----------DHMRNHKPHSKLVLNEGTDEPTRVVDQAGP---
Query: ----------------------SSRVDEGANTSSQSRP------------------------------------------SQSLGMPRRSGRVVCQPNRY
SS +D ++S S P +QSL P +S P
Subjt: ----------------------SSRVDEGANTSSQSRP------------------------------------------SQSLGMPRRSGRVVCQPNRY
Query: LGLAETQVVIPDDDVEDPLSYKQTMSD--------------------------------------------VDKDQWIKAMDLEMESMDFNSVWELVDQP
+ T P + P Q +++ + ++W AM E+ + N W+LV P
Subjt: LGLAETQVVIPDDDVEDPLSYKQTMSD--------------------------------------------VDKDQWIKAMDLEMESMDFNSVWELVDQP
Query: EG-VRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIA
V +GC+WI+ +K ++ G + YKARLVAKG+ QR +DY ETF PV SIRI+L +A
Subjt: EG-VRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIA
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.1e-24 | 22.95 | Show/hide |
Query: LGHINLNRIERLSKNGLLNKLE-DVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------
LGH +L + + N L L L C C K K F+ + +PLE ++SD+ + + + Y Y++ F+D ++RY +L
Subjt: LGHINLNRIERLSKNGLLNKLE-DVSLPPCESCLEGKMTKRLFTGKGYRAIEPLELVHSDLCGPVNVKAREGYEYFISFIDDYSRYGYL-----------
Query: EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTLEFGVVLRHVSVS----------------
F ++K VEN I TL SD GGE++ LR DY+ +HGI S P+TP NG+SER++R +++M TL L H SV
Subjt: EFKVYKVEVENALGKTIKTLRSDRGGEYMDLRFQDYMIEHGIKSQLSTPNTPHQNGVSERRNRTLLDMFTTLEFGVVLRHVSVS----------------
Query: ----------------------------------------NPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLE----------------
N KLE +S+ C F+GY L ++ S + F E
Subjt: ----------------------------------------NPKKLEPRSRLCQFVGYPKETRGGLFYDPQENKVIVSTNTTFLE----------------
Query: ---EDHMRNHKPHSKL--------------------------------------------VLNEGTDEPTRVVDQAGPSSRV----------------DE
D N H+ L + + + EPT GP +
Subjt: ---EDHMRNHKPHSKL--------------------------------------------VLNEGTDEPTRVVDQAGPSSRV----------------DE
Query: GANTSSQSRPSQSLGMPR---------RSGRVVCQPNRYLGLAETQVVIP--------------------------DDDVEDP---LSY----------K
N+ S + P+Q+ +P+ + +PN + + +P D + P SY +
Subjt: GANTSSQSRPSQSLGMPR---------RSGRVVCQPNRYLGLAETQVVIP--------------------------DDDVEDP---LSY----------K
Query: QTMSDVDKDQWIKAMDLEMESMDFNSVWELV-DQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIA
+ + D+W +AM E+ + N W+LV P V +GC+WI+ +K ++ G + YKARLVAKG+ QR +DY ETF PV SIRI+L +A
Subjt: QTMSDVDKDQWIKAMDLEMESMDFNSVWELV-DQPEGVRPIGCKWIYKRKRDAAGKVQTYKARLVAKGFTQREEVDYEETFFPVAMLKSIRILLSIA
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