CuGenDBv2

Gene ID	Tan0019654
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG10:48442523..48443107
RNA-Seq Expression	Tan0019654
Synteny	Tan0019654
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

3.4e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

3.4e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

3.4e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

3.4e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

3.4e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.6e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

A0A5A7TU93 Gag/pol protein

1.6e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

A0A5A7TWB9 Gag/pol protein

1.6e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

A0A5D3CPJ6 Gag/pol protein

1.6e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

A0A5D3CSZ6 Gag/pol protein

1.6e-71

69.07

Show/hide

Query:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE
        M+S+ + +LA+DKL G+NY +WKN INT+L+ D+L+FVL EECPQV  +  +R++R+ Y+RW +ANEKA+ YI+ASLSEVLAKKHE M+TA+EIM+SLQE
Subjt:  MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQE

Query:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS
        MFGQ S+Q++HD LK+++NARM EG SVREHVL+MM HFN+AEMNGA IDE+SQVSFILE+LP+SFLQF SN VMNKI+YTLTTLLNELQ F+S
Subjt:  MFGQQSFQVRHDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

7.5e-05

25.49

Show/hide

Query:  GDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQEMFGQQSFQVRHDLLK
        G+ Y  WK  I  +L   ++  V++   P            +  D W +A   AK  II  LS+         +TA++I+E+L  ++ ++S   +  L K
Subjt:  GDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQEMFGQQSFQVRHDLLK

Query:  HVFNARMKEGVSVRE--HVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSF
         + + ++   +S+    H+ D +    LA   GA I+E  ++S +L TLP  +
Subjt:  HVFNARMKEGVSVRE--HVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSF

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTAGCTCAATAATAGCTTTACTCGCTTCCGACAAACTAGTGGGAGATAACTACCAAACATGGAAAAACAATATAAACACAATTCTAGTAACTGACAACCTTAAGTT
CGTGCTCAATGAGGAGTGTCCTCAAGTGTCGGGCTCGACCACGTCACGAAGTATTCGTGATGCGTACGATCGATGGATCAGGGCCAATGAAAAGGCCAAGATCTACATCA
TTGCCAGCTTGTCTGAAGTATTGGCAAAGAAGCATGAGTTGATGGTCACCGCCAAGGAGATCATGGAGTCATTGCAGGAAATGTTTGGACAACAGTCCTTTCAGGTCCGA
CATGATTTGCTCAAACACGTCTTCAACGCCCGGATGAAAGAAGGGGTGTCTGTCCGTGAACACGTTCTAGACATGATGACCCACTTTAATCTGGCAGAGATGAACGGGGC
TCCGATTGATGAGTCGAGCCAGGTCAGCTTTATCTTGGAGACTCTTCCGAAAAGTTTCCTTCAGTTTTGTAGCAATGTTGTTATGAACAAAATTAGCTACACTCTAACCA
CCCTTCTAAACGAGCTACAGAACTTCCAGTCTTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSSSIIALLASDKLVGDNYQTWKNNINTILVTDNLKFVLNEECPQVSGSTTSRSIRDAYDRWIRANEKAKIYIIASLSEVLAKKHELMVTAKEIMESLQEMFGQQSFQVR
HDLLKHVFNARMKEGVSVREHVLDMMTHFNLAEMNGAPIDESSQVSFILETLPKSFLQFCSNVVMNKISYTLTTLLNELQNFQS

Tan0019654 (gene) of Snake gourd v1 genome