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Tan0019680 (gene) of Snake gourd v1 genome

Gene IDTan0019680
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:43151716..43152072
RNA-Seq ExpressionTan0019680
SyntenyTan0019680
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025769.1 hypothetical protein E6C27_scaffold34G00120 [Cucumis melo var. makuwa]2.9e-2564.49Show/hide
Query:  EAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKCFRVMRCPEDRKV
        E GT +AT    RE + G+S+H   + NMEE+IF KI QRLA  V  AQAD EKKYGIER+KALGAT F+GT D V+VE WL LIEKCF VM C EDRKV
Subjt:  EAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKCFRVMRCPEDRKV

Query:  DLAAFLL
        +LA FLL
Subjt:  DLAAFLL

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-2760.83Show/hide
Query:  MARGGKRGRQVEAGTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEK
        M RG  R +  +A T  A  +   G   S+ ESS P  E NMEEQ+  ++ QRL   + SAQ+DPEKKYGIERLKALGATTF GTT+P D E WL LIEK
Subjt:  MARGGKRGRQVEAGTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEK

Query:  CFRVMRCPEDRKVDLAAFLL
        CFRV RCPEDRKV+LA+FLL
Subjt:  CFRVMRCPEDRKVDLAAFLL

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-2558.82Show/hide
Query:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  ++ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P DVE WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKC

Query:  FRVMRCPEDRKVDLAAFLL
        FRV R  EDRKV+LAAFLL
Subjt:  FRVMRCPEDRKVDLAAFLL

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.3e-2558.82Show/hide
Query:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  ++ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P DVE WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKC

Query:  FRVMRCPEDRKVDLAAFLL
        FRV R  EDRKV+LAAFLL
Subjt:  FRVMRCPEDRKVDLAAFLL

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]1.4e-2777.22Show/hide
Query:  MEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKCFRVMRCPEDRKVDLAAFLL
        ME+++F +ITQRLA SVGS Q DPEKK+GIERLKALGATTF+GTTDP+D E+WL LIEKCF+VMRCPED KV+LA FLL
Subjt:  MEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKCFRVMRCPEDRKVDLAAFLL

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein2.4e-2560.75Show/hide
Query:  EAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKCFRVMRCPEDRKV
        EA         G   S+ ESS P  E N+EEQ+  ++ QRL   +  AQ+D EKKYGIERLKALGATTF GTT+PVD E WL LIEKCF+V RC EDRKV
Subjt:  EAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKCFRVMRCPEDRKV

Query:  DLAAFLL
        +LAAFLL
Subjt:  DLAAFLL

A0A5A7SKG0 Uncharacterized protein1.4e-2564.49Show/hide
Query:  EAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKCFRVMRCPEDRKV
        E GT +AT    RE + G+S+H   + NMEE+IF KI QRLA  V  AQAD EKKYGIER+KALGAT F+GT D V+VE WL LIEKCF VM C EDRKV
Subjt:  EAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKCFRVMRCPEDRKV

Query:  DLAAFLL
        +LA FLL
Subjt:  DLAAFLL

A0A5A7T1M0 Reverse transcriptase6.4e-2658.82Show/hide
Query:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  ++ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P DVE WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKC

Query:  FRVMRCPEDRKVDLAAFLL
        FRV R  EDRKV+LAAFLL
Subjt:  FRVMRCPEDRKVDLAAFLL

A0A5D3BB91 Reverse transcriptase6.4e-2658.82Show/hide
Query:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  ++ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P DVE WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKC

Query:  FRVMRCPEDRKVDLAAFLL
        FRV R  EDRKV+LAAFLL
Subjt:  FRVMRCPEDRKVDLAAFLL

A0A5D3DES5 DNA/RNA polymerases superfamily protein5.2e-2860.83Show/hide
Query:  MARGGKRGRQVEAGTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEK
        M RG  R +  +A T  A  +   G   S+ ESS P  E NMEEQ+  ++ QRL   + SAQ+DPEKKYGIERLKALGATTF GTT+P D E WL LIEK
Subjt:  MARGGKRGRQVEAGTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEK

Query:  CFRVMRCPEDRKVDLAAFLL
        CFRV RCPEDRKV+LA+FLL
Subjt:  CFRVMRCPEDRKVDLAAFLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGTAGGCAAGTGGAGGCCGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAGATCTTCACGAAGATAACTCAAAGATTAGCTAAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAAAAGTATGGCATTGAAAGACTGAAGG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGTTGATGTTGAGGTTTGGCTTAATCTGATTGAGAAGTGTTTTAGGGTCATGCGATGCCCTGAAGACAGGAAG
GTCGATTTAGCAGCATTCTTACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGTAGGCAAGTGGAGGCCGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAGATCTTCACGAAGATAACTCAAAGATTAGCTAAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAAAAGTATGGCATTGAAAGACTGAAGG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGTTGATGTTGAGGTTTGGCTTAATCTGATTGAGAAGTGTTTTAGGGTCATGCGATGCCCTGAAGACAGGAAG
GTCGATTTAGCAGCATTCTTACTCTAG
Protein sequenceShow/hide protein sequence
MARGGKRGRQVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTKITQRLAKSVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVWLNLIEKCFRVMRCPEDRK
VDLAAFLL