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Tan0019681 (gene) of Snake gourd v1 genome

Gene IDTan0019681
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG01:47439223..47439732
RNA-Seq ExpressionTan0019681
SyntenyTan0019681
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.6e-5972.94Show/hide
Query:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN
        MADV     M +MERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQ MI NSIRAQYGGP+Q 
Subjt:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI NLRMP  YQPPKFQ+FD KGNPKQHVAHFVETCENAG+RGD +V+QFVR+LKGN F+
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]9.9e-5972.35Show/hide
Query:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN
        MADV     M +MERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQ MI +SIRAQYGGP+Q 
Subjt:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI NLRMP  YQPPKFQ+FD KGNPKQHVAHFVETCENAG+RGD +V+QFVR+LKGN F+
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]9.9e-5972.35Show/hide
Query:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN
        MADV     M +MERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQ MI +SIRAQYGGP+Q 
Subjt:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI NLRMP  YQPPKFQ+FD KGNPKQHVAHFVETCENAG+RGD +V+QFVR+LKGN F+
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]9.9e-5972.35Show/hide
Query:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN
        MADV     M +MERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQ MI +SIRAQYGGP+Q 
Subjt:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI NLRMP  YQPPKFQ+FD KGNPKQHVAHFVETCENAG+RGD +V+QFVR+LKGN F+
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.6e-5972.94Show/hide
Query:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN
        MADV     M +MERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQ MI NSIRAQYGGP+Q 
Subjt:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI NLRMP  YQPPKFQ+FD KGNPKQHVAHFVETCENAG+RGD +V+QFVR+LKGN F+
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein1.5e-5769.41Show/hide
Query:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN
        MAD+     M +MERKIN LMKA EERD EI  L+ Q++ +ETTESSQTP V+  DKGKN++QE QP Q + SVASLSVQQLQ MI+N IRAQYGGP Q 
Subjt:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI +LRMP  YQPPKFQ+FD KGNPKQH+AHFVETCENAG+RGD +V+QFVR+LKGN F+
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
A0A5A7TZU9 Ribonuclease H1.5e-5768.24Show/hide
Query:  MADVDPNE-RMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLASVASLSVQQLQHMIMNSIRAQYGGPAQN
        + DVD +E RM ++E+K+N+LMKAVEERD EIA LKN +++++  ESS T  ++N +KGK I+QE QP    S+ASLSVQQLQ MI NSI+ QYGGPAQ 
Subjt:  MADVDPNE-RMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLASVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI N+RMP  YQPPKFQ+FD KGNPKQHVAHF+ETCE AGTRGDL+VKQFVRTLKGN FD
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
A0A5A7VDN4 Ty3-gypsy retrotransposon protein2.0e-5769.41Show/hide
Query:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN
        MAD+     M +MERKIN LMKAVEERD EI  L+ Q++ +ET ESSQTP V+  DKGKN++Q+ QP Q + SVASLSVQQLQ MI NSIRAQYGGP   
Subjt:  MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI NLRMP  YQPPKFQ+FD KGNPKQH+AHFVETCENAG+RGD +V+QFVR+LKGN F+
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
A0A5D3CSH0 Ty3-gypsy retrotransposon protein1.5e-5767.65Show/hide
Query:  MADVDPNE-RMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLASVASLSVQQLQHMIMNSIRAQYGGPAQN
        + +VD +E RM ++E+K+N+LMK VEERD EIA+LKN +++++  ESS    V+N DKGK ++QE QP  L S+ASLSVQQLQ MI +SI+ QYGGPAQ 
Subjt:  MADVDPNE-RMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLASVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI NLRMP  YQPPKFQ+FD KGNPKQHVAHF+ETCE AGTRGDL+VKQFVRTLKGN FD
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
A0A5D3E0F3 Ty3-gypsy retrotransposon protein1.5e-5768.24Show/hide
Query:  MADVDPNE-RMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLASVASLSVQQLQHMIMNSIRAQYGGPAQN
        + DVD +E RM ++E+K+N+LMK VEERD EIA+LKN +++ +  ESS    V+N DKGK ++QE QP  L S+ASLSVQQLQ MI NSI+ QYGGPAQ 
Subjt:  MADVDPNE-RMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLASVASLSVQQLQHMIMNSIRAQYGGPAQN

Query:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
           YSKPYTKRI NLRMP  YQPPK Q+FD KGNPKQHVAHF+ETCE AGTRGDL+VKQFVRTLKGN FD
Subjt:  PLTYSKPYTKRIGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGTGGACCCTAATGAAAGGATGACGAAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTATCTAAAAAACCA
AGTCCAAAACAAAGAAACGACTGAATCTAGCCAAACCCCTGCAGTAAGAAACAACGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCACAACTAGCTTCAGTCG
CTTCTCTATCCGTCCAACAACTGCAACACATGATCATGAACTCTATTAGAGCTCAGTATGGCGGGCCTGCTCAAAATCCTCTTACGTACTCCAAACCGTACACCAAGAGG
ATTGGCAATTTAAGGATGCCCACAAGGTACCAACCTCCAAAATTCCAGAAGTTTGACGAGAAGGGCAACCCAAAGCAACATGTTGCACATTTCGTCGAAACCTGCGAAAA
TGCAGGGACGCGTGGTGACCTCATGGTCAAGCAATTCGTACGTACCTTGAAAGGAAATGTCTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGTGGACCCTAATGAAAGGATGACGAAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTATCTAAAAAACCA
AGTCCAAAACAAAGAAACGACTGAATCTAGCCAAACCCCTGCAGTAAGAAACAACGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCACAACTAGCTTCAGTCG
CTTCTCTATCCGTCCAACAACTGCAACACATGATCATGAACTCTATTAGAGCTCAGTATGGCGGGCCTGCTCAAAATCCTCTTACGTACTCCAAACCGTACACCAAGAGG
ATTGGCAATTTAAGGATGCCCACAAGGTACCAACCTCCAAAATTCCAGAAGTTTGACGAGAAGGGCAACCCAAAGCAACATGTTGCACATTTCGTCGAAACCTGCGAAAA
TGCAGGGACGCGTGGTGACCTCATGGTCAAGCAATTCGTACGTACCTTGAAAGGAAATGTCTTTGATTAG
Protein sequenceShow/hide protein sequence
MADVDPNERMTKMERKINLLMKAVEERDLEIAYLKNQVQNKETTESSQTPAVRNNDKGKNIIQEEQPPQLASVASLSVQQLQHMIMNSIRAQYGGPAQNPLTYSKPYTKR
IGNLRMPTRYQPPKFQKFDEKGNPKQHVAHFVETCENAGTRGDLMVKQFVRTLKGNVFD