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Tan0019766 (gene) of Snake gourd v1 genome

Gene IDTan0019766
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG11:54844048..54844557
RNA-Seq ExpressionTan0019766
SyntenyTan0019766
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.5e-6271.18Show/hide
Query:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN
        + DVD  E  MAE+EKK+N+LMKA+E++D EIA LK+ I+SRD AESSHT   +N++KGK +  E QP    S+ASLSVQQLQ+MI NSI+TQYGGP+Q 
Subjt:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          +YSKPYTKRIDN+RMP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVK+FVRTL GNAFD
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

KAA0058295.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-6270.59Show/hide
Query:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN
        + +VD  E+ MAE+EKK+N+LMK +E++D EIA+LK+ I+SRD AESSH  + +N+DKGK V  E QP    S+ASLSVQQLQ+MI +SI+TQYGGP+Q 
Subjt:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVK+FVRTL GNAFD
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

TYK18586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.3e-6271.18Show/hide
Query:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN
        + DVD  E  MAE+EKK+N+LMK +E++D EIA+LK+ I+SRD AESSH    +N+DKGK V  E QP    S+ASLSVQQLQ+MI +SI+TQYGGP+Q 
Subjt:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVK+FVRTL GNAFD
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.6e-6273.53Show/hide
Query:  MADVDPDESMAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPA-SVASLSVQQLQDMIMNSIRTQYGGPSQN
        MADV  + +MAE+E+KINLLMK ++++D EIA LK Q+Q+R+TAESS TPV +  DKGK V  E QP Q + SVASLSVQQLQDMI NSIR QYGGPSQ 
Subjt:  MADVDPDESMAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPA-SVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          MYSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV++FVR+L GNAF+
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]5.6e-6273.53Show/hide
Query:  MADVDPDESMAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPA-SVASLSVQQLQDMIMNSIRTQYGGPSQN
        MADV  + +MAE+E+KINLLMK ++++D EIA LK Q+Q+R+TAESS TPV +  DKGK V  E QP Q + SVASLSVQQLQDMI NSIR QYGGPSQ 
Subjt:  MADVDPDESMAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPA-SVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          MYSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV++FVR+L GNAF+
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H1.2e-6271.18Show/hide
Query:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN
        + DVD  E  MAE+EKK+N+LMKA+E++D EIA LK+ I+SRD AESSHT   +N++KGK +  E QP    S+ASLSVQQLQ+MI NSI+TQYGGP+Q 
Subjt:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          +YSKPYTKRIDN+RMP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVK+FVRTL GNAFD
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

A0A5A7UUI7 Ty3-gypsy retrotransposon protein4.6e-6270.59Show/hide
Query:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN
        + +VD  E+ MAE+EKK+N+LMK +E++D EIA+LK+ I+SRD AESSH    +N+DKGK V  E QP    S+ASLSVQQLQ+MI +SI+TQYGGP+Q 
Subjt:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVK+FVRTL GNAFD
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

A0A5A7UXF0 Ty3-gypsy retrotransposon protein2.1e-6270.59Show/hide
Query:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN
        + +VD  E+ MAE+EKK+N+LMK +E++D EIA+LK+ I+SRD AESSH  + +N+DKGK V  E QP    S+ASLSVQQLQ+MI +SI+TQYGGP+Q 
Subjt:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVK+FVRTL GNAFD
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

A0A5D3BX77 Retrotransposon gag protein4.6e-6270.59Show/hide
Query:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN
        + +VD  E+ MAE+EKK+N+LMK +E++D EIA+LK+ I+SRD AESSH    +N+DKGK V  E QP    S+ASLSVQQLQ+MI +SI+TQYGGP+Q 
Subjt:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVK+FVRTL GNAFD
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

A0A5D3D4X3 Ty3-gypsy retrotransposon protein1.6e-6271.18Show/hide
Query:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN
        + DVD  E  MAE+EKK+N+LMK +E++D EIA+LK+ I+SRD AESSH    +N+DKGK V  E QP    S+ASLSVQQLQ+MI +SI+TQYGGP+Q 
Subjt:  MADVDPDES-MAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQN

Query:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD
          +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVK+FVRTL GNAFD
Subjt:  PLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGTAGACCCTGATGAAAGTATGGCGGAAGTGGAGAAAAAAATCAATCTCCTGATGAAGGCGATGGAAGACAAAGATCTTGAAATCGCCTACCTCAAAAGTCA
AATTCAAAGTAGGGATACAGCTGAATCCAGCCACACCCCTGTAGCAAGAAATAGTGACAAAGGAAAAACTGTTTTCCATGAGGAACAACCATCACAACCTGCTTCGGTTG
CTTCTTTATCCGTTCAACAGTTGCAGGACATGATTATGAACTCTATCAGAACTCAGTACGGTGGACCCAGTCAAAATCCTCTCATGTACTCCAAACCATACACCAAGAGG
ATTGATAACCTGAGGATGCCCACAGGGTACCAACCTCCAAAATTTCAACAGTTCGACGGAAAGGGCAACCCAAAGCAACACATTGCACATTTCGTTGAAACCTGCGAAAA
TGCAGGGACGCGTGGTGACCTTCTGGTGAAGAAATTCGTGCGTACCTTGAATGGAAATGCTTTCGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGTAGACCCTGATGAAAGTATGGCGGAAGTGGAGAAAAAAATCAATCTCCTGATGAAGGCGATGGAAGACAAAGATCTTGAAATCGCCTACCTCAAAAGTCA
AATTCAAAGTAGGGATACAGCTGAATCCAGCCACACCCCTGTAGCAAGAAATAGTGACAAAGGAAAAACTGTTTTCCATGAGGAACAACCATCACAACCTGCTTCGGTTG
CTTCTTTATCCGTTCAACAGTTGCAGGACATGATTATGAACTCTATCAGAACTCAGTACGGTGGACCCAGTCAAAATCCTCTCATGTACTCCAAACCATACACCAAGAGG
ATTGATAACCTGAGGATGCCCACAGGGTACCAACCTCCAAAATTTCAACAGTTCGACGGAAAGGGCAACCCAAAGCAACACATTGCACATTTCGTTGAAACCTGCGAAAA
TGCAGGGACGCGTGGTGACCTTCTGGTGAAGAAATTCGTGCGTACCTTGAATGGAAATGCTTTCGACTAG
Protein sequenceShow/hide protein sequence
MADVDPDESMAEVEKKINLLMKAMEDKDLEIAYLKSQIQSRDTAESSHTPVARNSDKGKTVFHEEQPSQPASVASLSVQQLQDMIMNSIRTQYGGPSQNPLMYSKPYTKR
IDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKKFVRTLNGNAFD