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Tan0019800 (gene) of Snake gourd v1 genome

Gene IDTan0019800
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG10:42094614..42119041
RNA-Seq ExpressionTan0019800
SyntenyTan0019800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151643.1 uncharacterized protein LOC111019551 [Momordica charantia]1.8e-0449.3Show/hide
Query:  NPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDVGVFP-YMLCKVEIQDGD
        NPS+ G+DDMNQ    + LP  PITRSRAK+LQ A  +HIQ +VS      ED G    Y  C++ I+D D
Subjt:  NPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDVGVFP-YMLCKVEIQDGD

XP_022158199.1 uncharacterized protein LOC111024737 [Momordica charantia]4.4e-1142.52Show/hide
Query:  DMNQGPPIVMPEGPITRSRAKKLQQGLITYIQDMVSSKEEVLEDVGVFPYMLCKFSWSCGFSINLHARVIQVVLIVPLANPSQEGEDDMNQGPPIVMLPE
        D+NQG  IVMP+GPITRSR+KK  Q                 E  G  P+ + +      + I+L              NPSQE EDD+NQG  IVM P+
Subjt:  DMNQGPPIVMPEGPITRSRAKKLQQGLITYIQDMVSSKEEVLEDVGVFPYMLCKFSWSCGFSINLHARVIQVVLIVPLANPSQEGEDDMNQGPPIVMLPE

Query:  GPITRSRAKKLQQALITHIQAMVSSKE
        GPITRSR+KKLQQAL++++Q +    E
Subjt:  GPITRSRAKKLQQALITHIQAMVSSKE

XP_022159097.1 uncharacterized protein LOC111025539 [Momordica charantia]2.1e-0555.22Show/hide
Query:  NPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDV-GVFPYMLCKVEI
        NPS+ GEDDMNQ    + LP GPITRSRAK+LQ A  +HIQA VSS     ED  G   Y  C++ I
Subjt:  NPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDV-GVFPYMLCKVEI

XP_038900633.1 uncharacterized protein LOC120087799 [Benincasa hispida]9.1e-1767.95Show/hide
Query:  PLANPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDVGVFPYMLCKVEIQDGDALNAF
        P  NPSQE EDD N+G  I+M  +G I RSRAKKL QALITHIQAMV+S ++++EDV V  YMLCKVE QD DALNAF
Subjt:  PLANPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDVGVFPYMLCKVEIQDGDALNAF

TrEMBL top hitse value%identityAlignment
A0A2N9GT99 Integrase catalytic domain-containing protein2.3e-0532.7Show/hide
Query:  DMNQG-----PPIVMPEGPITRSRAKKLQ---QGLITYIQDMVSSKEEVLEDVGVFPY---MLCKFSWSCGFSINLHARVI----------QVVLIVPL-
        D NQG      P+ +P+GPITRSRAKK++   QGL+    D  S    +  D+   P                 +LH RV+           V  + P  
Subjt:  DMNQG-----PPIVMPEGPITRSRAKKLQ---QGLITYIQDMVSSKEEVLEDVGVFPY---MLCKFSWSCGFSINLHARVI----------QVVLIVPL-

Query:  ------ANPSQEGEDDMNQGPPI----VMLPEGPITRSRAKKLQQALITHIQAMVSSKE
              +NP +E  +D NQG P     + +P+GPITRSRAKK+++A+    Q +V  K+
Subjt:  ------ANPSQEGEDDMNQGPPI----VMLPEGPITRSRAKKLQQALITHIQAMVSSKE

A0A2N9HSZ8 Uncharacterized protein9.2e-0735.29Show/hide
Query:  DMNQG-----PPIVMPEGPITRSRAKKLQ---QGLITYIQDMV---SSKEEVLEDVGVFPYMLCKFSWSCGFSINLHARVIQVVLIVPLANPSQEGEDDM
        D NQG      P+ +P+GPITRSRAKK++   QGL+     +     SK   L   G  P+ + +        IN +A  + +      +NP +E  +D 
Subjt:  DMNQG-----PPIVMPEGPITRSRAKKLQ---QGLITYIQDMV---SSKEEVLEDVGVFPYMLCKFSWSCGFSINLHARVIQVVLIVPLANPSQEGEDDM

Query:  NQGPPI----VMLPEGPITRSRAKKLQQALITHIQA
        NQG P     + +P+GPITRSRAKK+++A+   +Q+
Subjt:  NQGPPI----VMLPEGPITRSRAKKLQQALITHIQA

A0A6J1DCS9 uncharacterized protein LOC1110195518.6e-0549.3Show/hide
Query:  NPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDVGVFP-YMLCKVEIQDGD
        NPS+ G+DDMNQ    + LP  PITRSRAK+LQ A  +HIQ +VS      ED G    Y  C++ I+D D
Subjt:  NPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDVGVFP-YMLCKVEIQDGD

A0A6J1DYP6 uncharacterized protein LOC1110247372.1e-1142.52Show/hide
Query:  DMNQGPPIVMPEGPITRSRAKKLQQGLITYIQDMVSSKEEVLEDVGVFPYMLCKFSWSCGFSINLHARVIQVVLIVPLANPSQEGEDDMNQGPPIVMLPE
        D+NQG  IVMP+GPITRSR+KK  Q                 E  G  P+ + +      + I+L              NPSQE EDD+NQG  IVM P+
Subjt:  DMNQGPPIVMPEGPITRSRAKKLQQGLITYIQDMVSSKEEVLEDVGVFPYMLCKFSWSCGFSINLHARVIQVVLIVPLANPSQEGEDDMNQGPPIVMLPE

Query:  GPITRSRAKKLQQALITHIQAMVSSKE
        GPITRSR+KKLQQAL++++Q +    E
Subjt:  GPITRSRAKKLQQALITHIQAMVSSKE

A0A6J1DYV9 uncharacterized protein LOC1110255391.0e-0555.22Show/hide
Query:  NPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDV-GVFPYMLCKVEI
        NPS+ GEDDMNQ    + LP GPITRSRAK+LQ A  +HIQA VSS     ED  G   Y  C++ I
Subjt:  NPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDV-GVFPYMLCKVEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTACACTTCAACTTGTTTCTTTGCATATCTTGTGTGTTAGATTTGCATGCTAGGATCATTCAAGTAGCGTTGATCAACTACTTGTGGAGTGATTCGAATCTTGA
GTTTAGAAACAAGTTTTCTCTACTCTTGATCTTGATCATCAAGGTTGTTAGATTTAAATCATCAAGTGTTACTGATATGAACCAAGGACCACCTATTGTCATGCCTGAAG
GTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGGTTTAATAACTTATATTCAAGATATGGTGAGCTCAAAAGAGGAGGTTCTAGAAGATGTTGGAGTCTTTCCC
TACATGTTATGCAAATTTTCATGGTCTTGCGGGTTTTCTATCAATTTGCATGCTAGAGTCATTCAAGTGGTGTTGATCGTACCTCTTGCTAATCCTTCTCAAGAGGGGGA
GGATGATATGAACCAAGGACCACCTATTGTCATGCTGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGG
TGAGCTCAAAAGAGGAGGTTCTAGAAGATGTTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAAATTCAAGATGGAGACGCATTAAATGCATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGACTACACTTCAACTTGTTTCTTTGCATATCTTGTGTGTTAGATTTGCATGCTAGGATCATTCAAGTAGCGTTGATCAACTACTTGTGGAGTGATTCGAATCTTGA
GTTTAGAAACAAGTTTTCTCTACTCTTGATCTTGATCATCAAGGTTGTTAGATTTAAATCATCAAGTGTTACTGATATGAACCAAGGACCACCTATTGTCATGCCTGAAG
GTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGGTTTAATAACTTATATTCAAGATATGGTGAGCTCAAAAGAGGAGGTTCTAGAAGATGTTGGAGTCTTTCCC
TACATGTTATGCAAATTTTCATGGTCTTGCGGGTTTTCTATCAATTTGCATGCTAGAGTCATTCAAGTGGTGTTGATCGTACCTCTTGCTAATCCTTCTCAAGAGGGGGA
GGATGATATGAACCAAGGACCACCTATTGTCATGCTGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGG
TGAGCTCAAAAGAGGAGGTTCTAGAAGATGTTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAAATTCAAGATGGAGACGCATTAAATGCATTCTAA
Protein sequenceShow/hide protein sequence
MGLHFNLFLCISCVLDLHARIIQVALINYLWSDSNLEFRNKFSLLLILIIKVVRFKSSSVTDMNQGPPIVMPEGPITRSRAKKLQQGLITYIQDMVSSKEEVLEDVGVFP
YMLCKFSWSCGFSINLHARVIQVVLIVPLANPSQEGEDDMNQGPPIVMLPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDVGVFPYMLCKVEIQDGDALNAF