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Tan0019824 (gene) of Snake gourd v1 genome

Gene IDTan0019824
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG08:36127455..36127778
RNA-Seq ExpressionTan0019824
SyntenyTan0019824
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042138.1 uncharacterized protein E6C27_scaffold67G006260 [Cucumis melo var. makuwa]3.2e-3170.3Show/hide
Query:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA
        +QRQSQR P Q  RSTVR    QES+AS  RRT CTNCG++HRG CLVG DVCYQCGQPGHFK+DC QL    Q DQGVGSQTVEQ RV V   EGTSGA
Subjt:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA

Query:  K
        +
Subjt:  K

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-3270.09Show/hide
Query:  MHVSGAYQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAR
        M    AYQRQSQRA  Q   S  RP T QESVAS  RRTPC +C KSHRG CLVG  VCYQCGQ GHFKRDCPQLR   Q DQGV S TVEQPR+  AAR
Subjt:  MHVSGAYQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAR

Query:  EGTSGAK
        EGTSGA+
Subjt:  EGTSGAK

KAA0053322.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.1e-3169.31Show/hide
Query:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA
        +QRQSQR PCQ  RSTVR    QES+AS  RR PCT+CG++HRG CLVG  VCYQCGQPGHFK+DCPQL    + DQGVGSQTVEQ RV V   EGTSGA
Subjt:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA

Query:  K
        +
Subjt:  K

KAA0060440.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-3170.3Show/hide
Query:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA
        +QRQSQR P Q  RSTVR    QES+AS  RRTPCT+CG++HRG CLVG  VCYQCGQPGHFK+DCPQL    Q DQGVGSQTVEQ RV V   EGTSGA
Subjt:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA

Query:  K
        +
Subjt:  K

KAA0061889.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-3170.3Show/hide
Query:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA
        +QRQSQR P Q  RSTVR    QES+AS  RRTPCT+CG++HRG CLVG  VCYQCGQPGHFK+DCPQL    Q DQGVGSQTVEQ RV V   EGTSGA
Subjt:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA

Query:  K
        +
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A5A7TH36 CCHC-type domain-containing protein1.6e-3170.3Show/hide
Query:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA
        +QRQSQR P Q  RSTVR    QES+AS  RRT CTNCG++HRG CLVG DVCYQCGQPGHFK+DC QL    Q DQGVGSQTVEQ RV V   EGTSGA
Subjt:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA

Query:  K
        +
Subjt:  K

A0A5A7U9X4 DNA/RNA polymerases superfamily protein8.3e-3370.09Show/hide
Query:  MHVSGAYQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAR
        M    AYQRQSQRA  Q   S  RP T QESVAS  RRTPC +C KSHRG CLVG  VCYQCGQ GHFKRDCPQLR   Q DQGV S TVEQPR+  AAR
Subjt:  MHVSGAYQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAR

Query:  EGTSGAK
        EGTSGA+
Subjt:  EGTSGAK

A0A5A7UC49 Reverse transcriptase5.4e-3269.31Show/hide
Query:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA
        +QRQSQR PCQ  RSTVR    QES+AS  RR PCT+CG++HRG CLVG  VCYQCGQPGHFK+DCPQL    + DQGVGSQTVEQ RV V   EGTSGA
Subjt:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA

Query:  K
        +
Subjt:  K

A0A5A7UZA9 Retrotransposon protein9.2e-3270.3Show/hide
Query:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA
        +QRQSQR P Q  RSTVR    QES+AS  RRTPCT+CG++HRG CLVG  VCYQCGQPGHFK+DCPQL    Q DQGVGSQTVEQ RV V   EGTSGA
Subjt:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA

Query:  K
        +
Subjt:  K

A0A5A7V873 DNA/RNA polymerases superfamily protein5.4e-3270.3Show/hide
Query:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA
        +QRQSQR P Q  RSTVR    QES+AS  RRTPCT+CG++HRG CLVG  VCYQCGQPGHFK+DCPQL    Q DQGVGSQTVEQ RV V   EGTSGA
Subjt:  YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGA

Query:  K
        +
Subjt:  K

SwissProt top hitse value%identityAlignment
P24107 Gag-Pol polyprotein3.2e-0530Show/hide
Query:  QSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDV-----CYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTS
        Q  R   ++ +  + PP I  + A  RR   C NCGK   GH            C++CG+PGH   +CP  +A    D  +G +  + PR P +    T+
Subjt:  QSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDV-----CYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGTGAGTGGTGCCTATCAGAGGCAGAGTCAAAGAGCACCTTGTCAATCTGCCAGATCCACAGTAAGACCACCAACAATACAGGAGTCTGTTGCAAGTGCAAGAAG
GAGAACTCCATGTACAAATTGTGGCAAGAGTCATCGAGGCCACTGTCTTGTGGGTGTCGATGTGTGTTACCAGTGTGGGCAGCCAGGGCATTTCAAGAGGGATTGTCCAC
AGCTGAGAGCAGCCACACAGATGGACCAGGGAGTTGGGTCCCAAACAGTTGAGCAGCCAAGAGTTCCAGTAGCTGCAAGAGAGGGCACCAGTGGTGCTAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGTGAGTGGTGCCTATCAGAGGCAGAGTCAAAGAGCACCTTGTCAATCTGCCAGATCCACAGTAAGACCACCAACAATACAGGAGTCTGTTGCAAGTGCAAGAAG
GAGAACTCCATGTACAAATTGTGGCAAGAGTCATCGAGGCCACTGTCTTGTGGGTGTCGATGTGTGTTACCAGTGTGGGCAGCCAGGGCATTTCAAGAGGGATTGTCCAC
AGCTGAGAGCAGCCACACAGATGGACCAGGGAGTTGGGTCCCAAACAGTTGAGCAGCCAAGAGTTCCAGTAGCTGCAAGAGAGGGCACCAGTGGTGCTAAATAG
Protein sequenceShow/hide protein sequence
MHVSGAYQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK