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Tan0019826 (gene) of Snake gourd v1 genome

Gene IDTan0019826
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPre-mRNA-splicing factor SLU7
Genome locationLG03:52066642..52069059
RNA-Seq ExpressionTan0019826
SyntenyTan0019826
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0000386 - second spliceosomal transesterification activity (molecular function)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651585.1 hypothetical protein Csa_023455 [Cucumis sativus]4.3e-0894.59Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

KAG6582387.1 Pre-mRNA-splicing factor SLU7, partial [Cucurbita argyrosperma subsp. sororia]1.9e-0860.56Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYK
        +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK + +   R   +   IH S   G+   K + LY+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYK

KAG7018792.1 Pre-mRNA-splicing factor SLU7 [Cucurbita argyrosperma subsp. argyrosperma]4.3e-0894.59Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

XP_004139195.2 pre-mRNA-splicing factor SLU7 [Cucumis sativus]4.3e-0894.59Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

XP_038875771.1 uncharacterized protein LOC120068141 [Benincasa hispida]1.6e-1064.91Show/hide
Query:  MKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYKYETVAEVLANIPKEITRDDA
        +K+ RFKVEG E SVLLQIHRSYN+ R +LKK WL KY+ + + LANI  EITR+DA
Subjt:  MKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYKYETVAEVLANIPKEITRDDA

TrEMBL top hitse value%identityAlignment
A0A0A0LFN9 Pre-mRNA-splicing factor SLU72.1e-0894.59Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

A0A1U7Z941 Pre-mRNA-splicing factor SLU72.1e-0894.59Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

A0A5D3D476 Pre-mRNA-splicing factor SLU72.1e-0894.59Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

A0A6J1E9E3 Pre-mRNA-splicing factor SLU72.1e-0894.59Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

A0A6J1ITK9 Pre-mRNA-splicing factor SLU72.1e-0894.59Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

SwissProt top hitse value%identityAlignment
A2YQU8 Pre-mRNA-splicing factor SLU74.5e-0881.08Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +E  RRKEE DERKRKYNV+WNDEVT EDMEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

O23174 Pre-mRNA-splicing factor SLU7-B1.0e-0467.57Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +ED  R+EEKDERKRKYNV + ++VT E+MEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

Q6ZK48 Pre-mRNA-splicing factor SLU74.5e-0881.08Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +E  RRKEE DERKRKYNV+WNDEVT EDMEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

Q9SHY8 Pre-mRNA-splicing factor SLU7-A1.2e-0570.27Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +ED  R+EEKDERKRKYNV++N++VT E+MEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

Arabidopsis top hitse value%identityAlignment
AT1G65660.1 Pre-mRNA splicing Prp18-interacting factor8.7e-0770.27Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +ED  R+EEKDERKRKYNV++N++VT E+MEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

AT4G37120.1 Pre-mRNA splicing Prp18-interacting factor7.3e-0667.57Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +ED  R+EEKDERKRKYNV + ++VT E+MEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTTCAGGAGGATGAAAGAAGGAAGGAGGAGAAGGATGAAAGGAAGCGTAAATACAATGTGAGATGGAATGACGAGGTAACTGTGGAGGACATGGAGGCATATAG
AATGAAAAAGGAGCGGTTTAAAGTTGAAGGTCGTGAGACTTCAGTATTGCTTCAAATTCATCGTTCTTATAATAATGGGAGAGATAACTTAAAGAAAAAATGGTTGTACA
AATATGAAACAGTTGCAGAAGTTTTGGCCAATATTCCAAAAGAAATTACAAGAGATGATGCAGTGTATCTTGAAAAGTTATGGAAGTCAACTGAATGTCAAGTTATATTC
TATAATTTGGGAGCTAACACATTTGAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCTTCAGGAGGATGAAAGAAGGAAGGAGGAGAAGGATGAAAGGAAGCGTAAATACAATGTGAGATGGAATGACGAGGTAACTGTGGAGGACATGGAGGCATATAG
AATGAAAAAGGAGCGGTTTAAAGTTGAAGGTCGTGAGACTTCAGTATTGCTTCAAATTCATCGTTCTTATAATAATGGGAGAGATAACTTAAAGAAAAAATGGTTGTACA
AATATGAAACAGTTGCAGAAGTTTTGGCCAATATTCCAAAAGAAATTACAAGAGATGATGCAGTGTATCTTGAAAAGTTATGGAAGTCAACTGAATGTCAAGTTATATTC
TATAATTTGGGAGCTAACACATTTGAGAAATAA
Protein sequenceShow/hide protein sequence
MNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYKYETVAEVLANIPKEITRDDAVYLEKLWKSTECQVIF
YNLGANTFEK