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Tan0019839 (gene) of Snake gourd v1 genome

Gene IDTan0019839
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationLG02:75930983..75931186
RNA-Seq ExpressionTan0019839
SyntenyTan0019839
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]8.5e-1461.9Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        M+FL  ++A M+CHRKEV  +K G TEV+FKG R I+PT +IS +KA KLL+KGCTA+LA+VV
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

KAA0060259.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]1.1e-1357.14Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        MNF+S ++A ++CH+KE+V ++SG  E++F G RKIL TC+IST+K  KLL+KGCT YLA+V+
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1361.9Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        M+FL  ++A M+CH+KEV  RK G TEVVF+G RKI+PT +IS +KA KLL+KGC A+LA+VV
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]8.5e-1461.9Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        M+FL  ++A M+CHRKEV  +K G TEV+FKG R I+PT +IS +KA KLL+KGCTA+LA+VV
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

WP_217833159.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.9e-1363.49Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        M+FLS+Y A MDC +KEVV +    TEV+F+G RKILPTC+IS +KA KLL KGC AYLA+V+
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase4.1e-1461.9Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        M+FL  ++A M+CHRKEV  +K G TEV+FKG R I+PT +IS +KA KLL+KGCTA+LA+VV
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

A0A5A7V9N3 Reverse transcriptase9.2e-1461.9Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        M+FL  ++A M+CH+KEV  RK G TEVVF+G RKI+PT +IS +KA KLL+KGC A+LA+VV
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

A0A5D3B7T7 RNA-directed DNA polymerase-like protein5.4e-1457.14Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        MNF+S ++A ++CH+KE+V ++SG  E++F G RKIL TC+IST+K  KLL+KGCT YLA+V+
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

A0A5D3BTP3 Reverse transcriptase4.1e-1461.9Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        M+FL  ++A M+CHRKEV  +K G TEV+FKG R I+PT +IS +KA KLL+KGCTA+LA+VV
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

A0A5D3DSY7 Putative Retrotransposon protein9.2e-1461.9Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV
        M+FL  ++A M+CH+KEV  RK G TEVVF+G RKI+PT +IS +KA KLL+KGC A+LA+VV
Subjt:  MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTCTTATCTAGGTATCATGCCTTAATGGACTGCCATAGGAAGGAAGTTGTGTTGAGGAAATCAGGCGACACTGAGGTTGTGTTTAAGGGACATAGGAAGATATT
GCCTACTTGTATGATATCAACTATTAAAGCTGGGAAATTATTGAAGAAAGGTTGTACAGCATATCTTGCATATGTAGTTTGTGCACCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTCTTATCTAGGTATCATGCCTTAATGGACTGCCATAGGAAGGAAGTTGTGTTGAGGAAATCAGGCGACACTGAGGTTGTGTTTAAGGGACATAGGAAGATATT
GCCTACTTGTATGATATCAACTATTAAAGCTGGGAAATTATTGAAGAAAGGTTGTACAGCATATCTTGCATATGTAGTTTGTGCACCAAAGTGA
Protein sequenceShow/hide protein sequence
MNFLSRYHALMDCHRKEVVLRKSGDTEVVFKGHRKILPTCMISTIKAGKLLKKGCTAYLAYVVCAPK