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Tan0019896 (gene) of Snake gourd v1 genome

Gene IDTan0019896
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationLG05:8571824..8574039
RNA-Seq ExpressionTan0019896
SyntenyTan0019896
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0032502 - developmental process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY46183.1 hypothetical protein CUMW_095070 [Citrus unshiu]1.4e-4361.9Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+D RLRPT EF KS+GLK++DLQ V V +PE LCRD NK+LRPNF FLK CGF D QI AL          SIK+SLEPRIKFL+EVMGR+I+EV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL
        DYPDFF HGLKKRLELRH++LKQ NI C  + + +  +   + +F L
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL

KDO68435.1 hypothetical protein CISIN_1g020213mg [Citrus sinensis]6.7e-4361.22Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+D RLRPT EF KS+GLK++DLQ V V +PE LCRD NK+L PNF FLK CGF D QI AL          SIK+SLEPRIKFL+EVMGR+I+EV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL
        DYPDFF HGLKKRLELRH++LKQ NI C  + + +  +   + +F L
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL

XP_006422376.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Citrus clementina]1.4e-4361.9Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+D RLRPT EF KS+GLK++DLQ V V +PE LCRD NK+LRPNF FLK CGF D QI AL          SIK+SLEPRIKFL+EVMGR+I+EV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL
        DYPDFF HGLKKRLELRH++LKQ NI C  + + +  +   + +F L
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL

XP_006486552.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Citrus sinensis]6.7e-4361.22Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+D RLRPT EF KS+GLK++DLQ V V +PE LCRD NK+L PNF FLK CGF D QI AL          SIK+SLEPRIKFL+EVMGR+I+EV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL
        DYPDFF HGLKKRLELRH++LKQ NI C  + + +  +   + +F L
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL

XP_031269300.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Pistacia vera]4.0e-4368.75Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+D RLRPT EF KS+GLK++DLQ V V +PE LCRD NK+LRPNFN+LK CGF D QI AL          SIK+SLEPRIKFL+EVMGR+I+EV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDC
        D PDFF HGLKK LELRHK+LKQ N+DC
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDC

TrEMBL top hitse value%identityAlignment
A0A067FQJ4 Uncharacterized protein3.3e-4361.22Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+D RLRPT EF KS+GLK++DLQ V V +PE LCRD NK+L PNF FLK CGF D QI AL          SIK+SLEPRIKFL+EVMGR+I+EV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL
        DYPDFF HGLKKRLELRH++LKQ NI C  + + +  +   + +F L
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL

A0A2G5C4T7 Uncharacterized protein7.3e-4361.9Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+DKRLRPT EF KSIGL ++DLQ V + +PE +CRD +K+LRPNF FLK CGF D+QI AL          SI++SLEPRIKFL+EVMGR+I EV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL
        DYPDFF HGLKKRLELR K LKQNNI+C  + + E       D+F L
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL

A0A2H5P1D4 Uncharacterized protein6.6e-4461.9Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+D RLRPT EF KS+GLK++DLQ V V +PE LCRD NK+LRPNF FLK CGF D QI AL          SIK+SLEPRIKFL+EVMGR+I+EV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL
        DYPDFF HGLKKRLELRH++LKQ NI C  + + +  +   + +F L
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL

A0A2R6QI34 Transcription termination factor like3.6e-4265.93Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+DKRLRPTLEF KSIGL ++DLQ V V +PE LCRD NK+LRPN+ +LK CGF   QIVAL          SI +SLEPRIKFL+EVMGRRIEEV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE
        DYP FF HGL+KRLELR KILKQ +I C  + + E
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE

V4SF24 Uncharacterized protein6.6e-4461.9Show/hide
Query:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT
        MGYS+D RLRPT EF KS+GLK++DLQ V V +PE LCRD NK+LRPNF FLK CGF D QI AL          SIK+SLEPRIKFL+EVMGR+I+EV 
Subjt:  MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEVT

Query:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL
        DYPDFF HGLKKRLELRH++LKQ NI C  + + +  +   + +F L
Subjt:  DYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFEVLSSAQIDQFEL

SwissProt top hitse value%identityAlignment
F4IHL3 Transcription termination factor MTERF2, chloroplastic3.4e-0524.62Show/hide
Query:  SLDKRLRPTLEFQKS-IGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVALSIK---------HSLEPRIKFLIEVMGRRIEEVTDYP
        SL K++RP + F  +  G+   D+  V    P  L       L PN  +  + G R  Q+  +             +L P+ ++L   M R ++++ ++P
Subjt:  SLDKRLRPTLEFQKS-IGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVALSIK---------HSLEPRIKFLIEVMGRRIEEVTDYP

Query:  DFFWHGLKKRLELRHKILKQNNIDCKRNHI
         FF + L++R+  RH I+ +N ++ K  ++
Subjt:  DFFWHGLKKRLELRHKILKQNNIDCKRNHI

Q6AUK6 Transcription termination factor MTERF4, chloroplastic1.3e-0424.78Show/hide
Query:  FQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVALSI---------KHSLEPRIKFLIEVMGRRIEEVTDYPDFFWHGLKKRLE
        F+ SI +   D   V    P+A+      VL+ + NFL +CGF  +Q+  + +            ++   ++    M R +EE+ ++P FF +GL+  + 
Subjt:  FQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVALSI---------KHSLEPRIKFLIEVMGRRIEEVTDYPDFFWHGLKKRLE

Query:  LRHKILKQNNIDC
         RH+++ +    C
Subjt:  LRHKILKQNNIDC

Q9FK23 Transcription termination factor MTERF8, chloroplastic3.8e-0425Show/hide
Query:  SLDKRLRPTLEFQKSIG------------------LKDMDLQ-----AVEVGYPE----------ALCRDANKVLRPNFNFLKNCGFRDAQIVALSIKH-
        S +++LRP +EF K  G                  L + +L       V++GY            A+ R ++  ++       + G     I+A+S KH 
Subjt:  SLDKRLRPTLEFQKSIG------------------LKDMDLQ-----AVEVGYPE----------ALCRDANKVLRPNFNFLKNCGFRDAQIVALSIKH-

Query:  --------SLEPRIKFLIEVMGRRIEEVTDYPDFFWHGLKKRLELRHK
                SLE ++++LIE MGR +EE+  +P F  + L  R++ R++
Subjt:  --------SLEPRIKFLIEVMGRRIEEVTDYPDFFWHGLKKRLELRHK

Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial1.7e-3650.74Show/hide
Query:  MGYSLDKRLRPTLEFQK-SIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEV
        MGYS+DKRLRPT EF K S+GL +  +++V + +P+ LCRD NK+L+PN+++LK CGF D+QI  +          S+K+SL+PRI+FL++VMGR ++EV
Subjt:  MGYSLDKRLRPTLEFQK-SIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEV

Query:  TDYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE
          YP+FF HGLKK++E R K++K+NNIDC    + +
Subjt:  TDYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE

Arabidopsis top hitse value%identityAlignment
AT1G78930.1 Mitochondrial transcription termination factor family protein7.0e-1430.71Show/hide
Query:  GYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQ----------IVALSIKHSLEPRIKFLIEVMGRRIEEVTD
        G S++K L+  L F    G+       +   YPE L  DA+K + P   +L   G  + +          I+  SI   L P+ +FL+  M + + EV +
Subjt:  GYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQ----------IVALSIKHSLEPRIKFLIEVMGRRIEEVTD

Query:  YPDFFWHGLKKRLELRHKILKQNNIDC
        YP +F + L+KR++ R ++LK  NI+C
Subjt:  YPDFFWHGLKKRLELRHKILKQNNIDC

AT2G36000.1 Mitochondrial transcription termination factor family protein1.8e-0931.03Show/hide
Query:  SLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGF----------RDAQIVALSIKHSLEPRIKFLIEVMGRRIEEVTDYP
        S+D +LRPTL F + IG+ D       +      C   NK++ P  ++ +  GF          R  Q+   SI  + EP++K+L+  MGR + EV ++P
Subjt:  SLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGF----------RDAQIVALSIKHSLEPRIKFLIEVMGRRIEEVTDYP

Query:  DFFWHGLKKRLELRHK
         +F   L+ R++ RH+
Subjt:  DFFWHGLKKRLELRHK

AT4G38160.1 Mitochondrial transcription termination factor family protein1.2e-3750.74Show/hide
Query:  MGYSLDKRLRPTLEFQK-SIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEV
        MGYS+DKRLRPT EF K S+GL +  +++V + +P+ LCRD NK+L+PN+++LK CGF D+QI  +          S+K+SL+PRI+FL++VMGR ++EV
Subjt:  MGYSLDKRLRPTLEFQK-SIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEV

Query:  TDYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE
          YP+FF HGLKK++E R K++K+NNIDC    + +
Subjt:  TDYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE

AT4G38160.2 Mitochondrial transcription termination factor family protein1.2e-3750.74Show/hide
Query:  MGYSLDKRLRPTLEFQK-SIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEV
        MGYS+DKRLRPT EF K S+GL +  +++V + +P+ LCRD NK+L+PN+++LK CGF D+QI  +          S+K+SL+PRI+FL++VMGR ++EV
Subjt:  MGYSLDKRLRPTLEFQK-SIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEV

Query:  TDYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE
          YP+FF HGLKK++E R K++K+NNIDC    + +
Subjt:  TDYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE

AT4G38160.3 Mitochondrial transcription termination factor family protein1.2e-3750.74Show/hide
Query:  MGYSLDKRLRPTLEFQK-SIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEV
        MGYS+DKRLRPT EF K S+GL +  +++V + +P+ LCRD NK+L+PN+++LK CGF D+QI  +          S+K+SL+PRI+FL++VMGR ++EV
Subjt:  MGYSLDKRLRPTLEFQK-SIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVAL----------SIKHSLEPRIKFLIEVMGRRIEEV

Query:  TDYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE
          YP+FF HGLKK++E R K++K+NNIDC    + +
Subjt:  TDYPDFFWHGLKKRLELRHKILKQNNIDCKRNHIFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTATAGTCTTGATAAAAGGCTACGTCCTACATTAGAGTTTCAGAAATCTATAGGTTTGAAGGATATGGATCTTCAAGCAGTTGAAGTTGGCTACCCTGAAGCTCT
ATGTAGGGATGCTAACAAAGTTTTGAGACCTAATTTTAATTTCTTGAAGAACTGTGGTTTTCGAGATGCACAGATTGTAGCTCTGAGCATTAAACATTCTTTAGAACCGC
GGATCAAGTTCTTGATAGAAGTTATGGGGAGAAGGATTGAAGAAGTTACTGATTATCCAGACTTCTTTTGGCATGGTTTGAAGAAGAGGTTGGAGTTGCGGCACAAAATT
TTGAAACAAAACAATATCGATTGTAAGAGAAATCATATATTTGAAGTTTTGTCTTCTGCTCAAATAGATCAGTTTGAGCTTGGGACTTTTTATTTGAATGGCCCCTACAG
ACAAGATATGTATTTAAATGTGACCAAAATGAAGTCTAAACTTCAGTATTTAAGACCTCTGTTCTTGATTATACTCTCCTTGGAAGGAATAGAAAAAATATGCTTGAAAG
TAGTTCCTGCATGGACCAGAAGAATTGTGAACAGAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGTATAGTCTTGATAAAAGGCTACGTCCTACATTAGAGTTTCAGAAATCTATAGGTTTGAAGGATATGGATCTTCAAGCAGTTGAAGTTGGCTACCCTGAAGCTCT
ATGTAGGGATGCTAACAAAGTTTTGAGACCTAATTTTAATTTCTTGAAGAACTGTGGTTTTCGAGATGCACAGATTGTAGCTCTGAGCATTAAACATTCTTTAGAACCGC
GGATCAAGTTCTTGATAGAAGTTATGGGGAGAAGGATTGAAGAAGTTACTGATTATCCAGACTTCTTTTGGCATGGTTTGAAGAAGAGGTTGGAGTTGCGGCACAAAATT
TTGAAACAAAACAATATCGATTGTAAGAGAAATCATATATTTGAAGTTTTGTCTTCTGCTCAAATAGATCAGTTTGAGCTTGGGACTTTTTATTTGAATGGCCCCTACAG
ACAAGATATGTATTTAAATGTGACCAAAATGAAGTCTAAACTTCAGTATTTAAGACCTCTGTTCTTGATTATACTCTCCTTGGAAGGAATAGAAAAAATATGCTTGAAAG
TAGTTCCTGCATGGACCAGAAGAATTGTGAACAGAATTTAG
Protein sequenceShow/hide protein sequence
MGYSLDKRLRPTLEFQKSIGLKDMDLQAVEVGYPEALCRDANKVLRPNFNFLKNCGFRDAQIVALSIKHSLEPRIKFLIEVMGRRIEEVTDYPDFFWHGLKKRLELRHKI
LKQNNIDCKRNHIFEVLSSAQIDQFELGTFYLNGPYRQDMYLNVTKMKSKLQYLRPLFLIILSLEGIEKICLKVVPAWTRRIVNRI